(Q33281287)

25 July 2017

title

Integration of genome and chromatin structure with gene expression profiles to predict c-MYC recognition site binding and function (English)

1 reference

25 July 2017

Yili Chen

1 reference

25 July 2017

Thomas W Blackwell

1 reference

25 July 2017

Ji Chen

1 reference

25 July 2017

Jing Gao

1 reference

25 July 2017

Angel W Lee

1 reference

25 July 2017

David J States

1 reference

25 July 2017

publication date

1 April 2007

1 reference

PLOS Computational Biology

25 July 2017

published in

1 reference

25 July 2017

1 reference

25 July 2017

1 reference

25 July 2017

page(s)

e63

1 reference

Creative Commons Attribution 4.0 International

25 July 2017

start time

6 April 2007

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

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21 June 2018

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A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells

21 June 2018

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Analysis of Myc bound loci identified by CpG island arrays shows that Max is essential for Myc-dependent repression

21 June 2018

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A strategy for identifying transcription factor binding sites reveals two classes of genomic c-Myc target sites

21 June 2018

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21 June 2018

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Mechanisms of c-myc-mediated transcriptional repression of growth arrest genes

21 June 2018

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A large scale genetic analysis of c-Myc-regulated gene expression patterns

21 June 2018

1 reference

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21 June 2018

1 reference

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Identifying genes regulated in a Myc-dependent manner

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

A computerized database-scan to identify c-MYC targets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia

21 June 2018

1 reference

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Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Function of the c-Myc oncoprotein in chromatin remodeling and transcription.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

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21 June 2018

1 reference

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Myc is an essential negative regulator of platelet-derived growth factor beta receptor expression.

21 June 2018

1 reference

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21 June 2018

1 reference

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Function of the c-Myc oncogenic transcription factor.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Specificity of DNA binding of the c-Myc/Max and ARNT/ARNT dimers at the CACGTG recognition site

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Cell cycle-dependent switch of up-and down-regulation of human hsp70 gene expression by interaction between c-Myc and CBF/NF-Y

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

c-Myc target genes involved in cell growth, apoptosis, and metabolism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Involvement of Myc targets in c-myc and N-myc induced human tumors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

The molecular role of Myc in growth and transformation: recent discoveries lead to new insights

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

ECA39, a conserved gene regulated by c-Myc in mice, is involved in G1/S cell cycle regulation in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

TRANSFAC: a database on transcription factors and their DNA binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Overexpression of Myc suppresses CCAAT transcription factor/nuclear factor 1-dependent promoters in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Distinct DNA binding preferences for the c-Myc/Max and Max/Max dimers.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Repression of cyclin D1: a novel function of MYC

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Purification of CpG islands using a methylated DNA binding column

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

CpNpG methylation in mammalian cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

CpG islands in vertebrate genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Methylation-sensitive sequence-specific DNA binding by the c-Myc basic region

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

DNA binding activities of c-Myc purified from eukaryotic cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Reciprocal regulation of adipogenesis by Myc and C/EBP alpha

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

In chronic myeloid leukemia white cells from cytogenetic responders and non-responders to imatinib have very similar gene expression signatures.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Gene expression predictors of breast cancer outcomes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847699

Gene expression correlates of clinical prostate cancer behavior

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17411336

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A fraction of the mouse genome that is derived from islands of nonmethylated, CpG-rich DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17411336

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.0030063

1 reference

journals/ploscb/ChenBCGLS07

25 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

25 July 2017

1 reference