C library for high-throughput sequencing data formats

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R

A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file

The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049

BWK awk modified for biological data

genotyping by Mapping-free ALternate-allele detection of known VAriants

R Bindings for htslib/bcf

VCF/Bcf genotypes filtering using htslib

Variant calling format (vcf) file genomics pipeline for HPC and cloud

Genomic linked data converter. Interchange GFF, GVF, VCF files via JSON.

Subsample a VCF file in order to fix the minor allele frequency across SNPs