tools for working with genome variation graphs
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May 13, 2025 - C++
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variation-graph
Here are 17 public repositories matching this topic...
Modular Multi-scale Integrated Genome Graph Browser
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Nov 2, 2024 - TypeScript
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
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May 13, 2025 - Python
An accurate aligner of long reads to a variation graph, based on co-linear chaining
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Mar 13, 2023 - C++
A web-based, interactive pangenome visualization tool
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Apr 10, 2023 - TypeScript
Linear-time, low-memory construction of variation graphs
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Feb 3, 2020 - C++
SV genotyper for long reads with a variation graph
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Mar 18, 2025 - Python
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
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Mar 6, 2024 - C++
Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
distance distance-measures variation-graph distance-calculation pangenomics pangenome graph-distance variation-graphs pangenome-graph
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Apr 15, 2025 - Rust
A Go library for working with Graphical Fragment Assembly format
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May 2, 2019 - Go
Handlegraph RDF writers in java for working with variation graph genome data.
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Oct 27, 2023 - Java
Analysis of shared parts of a pangenome
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Jul 12, 2024 - Python
This is experiment to measure performance in vg recalibrate, testing different models.
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Sep 19, 2018 - Jupyter Notebook
Notes upon pangenome graphs construction
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Oct 17, 2024 - TypeScript
Library to parse, edit and handle in memory GFA graphs
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Apr 17, 2025 - Python
A tool for modelling graphs of genetic variation.
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Jun 3, 2019 - Java
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