Quickly search, compare, and analyze genomic and metagenomic data sets.
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Updated
Aug 27, 2024 - Python
Quickly search, compare, and analyze genomic and metagenomic data sets.
Poster presented at RECOMB 2017
Meta-analysis of metagenomes via machine learning and assembly graphs reveals strain switches in Crohn’s disease
A database for signatures of public genomic sources
Searching large collections of sequencing data with genome-scale queries
Streaming de Bruijn and Compact de Bruijn Graph Algorithms
fast, multithreaded sourmash operations: search, compare, and gather.
Scripts that are useful for sourmash, but not necessarily part of the base command line.
Poster and talk presented at Bioinformatics for the Microbiome Symposium at Stanford on 2018-09-24
Tools and workflows for evaluating bacterial and archaeal genome contamination with sourmash and GTDB.
Find disease associations across metagenomes with k-mers using sourmash, and then recover pangenomic accessory elements using spacegraphcats.
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