Quickly search, compare, and analyze genomic and metagenomic data sets.

Remove contaminated contigs from genomes using k-mers and taxonomies.

A database for signatures of public genomic sources

fast, multithreaded sourmash operations: search, compare, and gather.

Build sourmash databases for genbank.

Find disease associations across metagenomes with k-mers using sourmash, and then recover pangenomic accessory elements using spacegraphcats.

Qiime2 Sourmash Plugin

Tools and workflows for evaluating bacterial and archaeal genome contamination with sourmash and GTDB.

Explore microbial contamination in human whole-genome shotgun data sets, using sourmash

Preparing sourmash for CAMI 2 evaluations

sourmash plugin to filter hashes/k-mers by presence across many sketches

Tools and scripts for studying the GTDB taxonomy with sourmash

Example workflows and useful scripts for building your own sourmash databases

Sketch many files at once

Greedy iterative clustering of genomes using sourmash

template for building sourmash plugins

Scripts that are useful for sourmash, but not necessarily part of the base command line.

tools for sourmash-based pangenome analyses