reproducible research project template for R using Renv and snakemake with an econ application

Repo to analyze population genetic data with many different methods

Simple template for running snakemake with R

This repository has snakemake scripts for salmon-deseq2 pipeline for RNAseq data analysis

hla-typing by optitype & polysolver , detect loh by lohhla.

a small exercise using Angrist & Krueger's 1991 data in a reproducible workflow

Snakemake workflow for transposable element RNA-Seq using TEtranscripts

Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.

Integrated Mapping and Profiling of Allelically-expressed Loci with Annotations

Repository to process ITS amplicon sequencing data and produce figures for Schneider et al (2021)

Workflow for differential gene expression analysis for non-replicate samples using DEGseq

Differential gene expression analysis for samples with replicates using STAR-DeSeq2 pipeline

Test of Uniformity for centrosome orientation at early timepoints during Wound Healing Assay

Work at NIST: snakemake workflow to get short tandem repeats from WGS GIAB samples. R script for downstream processing and concordance

build xaringan slides with snakemake