Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

Protein Language Model

ProtFlash: A lightweight protein language model

Implementation of PocketGen: Generating Full-Atom Ligand-Binding Protein Pockets

Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

SaprotHub: Making Protein Modeling Accessible to All Biologists

Directed evolution of proteins in sequence space with gradients

Exploring Evolution-aware & free protein language models as protein function predictors

ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

Inference code for PoET: A generative model of protein families as sequences-of-sequences

Detection of remote homology by comparison of protein language model representations

PaccMann models for protein language modeling

Protein language model trained on coding DNA

Spectral Framework For AI Model Evaluation

MSAGPT

An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.

Latent-based Directed Evolution guided by Gradient Ascent for Protein Design

pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction

AutoML system for building trustworthy peptide bioactivity predictors

In silico protein surgery using ESM.