8000 pathology-image · GitHub Topics · GitHub

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pathology-image

Here are 40 public repositories matching this topic...

BMIRDS / deepslide

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

cancer resnet microscopy sliding-windows lung wsi medical-image-analysis pathology-image histopathology-images

Updated Jun 7, 2024
Python

nadeemlab / DeepLIIF

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

Updated Dec 8, 2025
Python

dazhangyu123 / ACMIL

Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification (ECCV2024)

weakly-supervised-learning digital-pathology computational-pathology multiple-instance-learning camelyon16 histopathology pathology-image whole-slide-image bracs acmil

Updated Apr 28, 2025
Python

gatsby2016 / Augmentation-PyTorch-Transforms

Image data augmentation on-the-fly by add new class on transforms in PyTorch and torchvision.

pytorch affine-transformation image-augmentation augmentation color-deconvolution pathology-image histopathology-images pytorch-transforms elastic-transformation

Updated Jan 8, 2023
Python

rezazad68 / TMUnet

Contextual Attention Network: Transformer Meets U-Net

deep-learning transformers pytorch unet semantic-segmentation skin-cancer unet-image-segmentation pathology-image segmentation-models

Updated Mar 29, 2022
Jupyter Notebook

Borda / BIRL

BIRL: Benchmark on Image Registration methods with Landmark validations

benchmark docker-image dataset medical-imaging landmarks image-registration evaluation-framework pathology-image anhir image-pair registration-methods cima registration-performances registration-benchmark

Updated Jan 4, 2022
Python

brain-coloring

razvanmarinescu / brain-coloring

BrainPainter - Brain Visualisation Software

visualisation neuroimaging brain brain-imaging pathology-image

Updated Feb 28, 2023
Python

ddw2AIGROUP2CQUPT / PA-LLaVA

A Large Language-Vision Assistant for Pathology Image Understanding (BIBM-2024 & Journal of Artificial Intelligence Review 2025)

pathology-image vision-language-model llava-llama3

Updated Jun 18, 2025
Python

jgamper / compay-syntax

🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

slide-images medical-imaging openslide whole-slide-imaging computational-pathology pathology-image wsis whole-slide-image

Updated Nov 22, 2022
Python

sdw95927 / pathology-images-analysis-using-CNN

Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area

image-recognition survival-analysis convolutional-neural-networks pathology-image

Updated Apr 8, 2021
Python

PingjunChen / tissueloc

Whole Slide Digital Pathology Image Tissue Localization

python pathology whole-slide-imaging computational-pathology pathology-image tissue-localization

Updated Oct 3, 2023
Python

kat

Zhengyushan / kat

The code for Kernel attention transformer (KAT)

wsi histopathology pathology-image histopathology-images whole-slide-image wsi-images histopathology-wsi wsi-encode wsi-classificaiton wsi-representation histopathology-image-classfication kernel-transformer histopathology-feature

Updated Jun 13, 2024
Python

MHMAILab / auto_lymph

Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning

deep-learning pathology-image pathologists

Updated Mar 19, 2021
Python

jopo666 / HistoPrep

Preprocessing module for large histological images

medical-imaging cut preprocess openslide medical-image-processing tissue-classification pathology medical-image-analysis histological-images pathology-image tissue-analysis histological-slides slide-image

Updated Jun 16, 2023
Python

peterlipan / Awesome-Multi-instance-Learning-for-Whole-Slide-Images

A curated list of awesome Multi-instance Learning frameworks for Whole Slide Images (WSIs) classification, segmentation, etc.

whole-slide-imaging pathology-image multi-instance-learning

Updated Aug 5, 2024

steven22tom / LabelSlide

LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)

deep-learning annotations python3 openseadragon openslide digital-pathology pathology labeltool pathology-image

Updated Jun 28, 2021
JavaScript

dazhangyu123 / AEM

AEM: Attention Entropy Maximization for Multiple Instance Learning based Whole Slide Image Classification

aem weakly-supervised-learning digital-pathology computational-pathology multiple-instance-learning camelyon16 pathology-image camelyon17 whole-slide-image bracs

Updated Jul 7, 2025
Python

smujiang / WSI2DICOM

Simple prototype of converting whole slide image (WSI) to multiframe DICOM images

convert dicom svs wsi image-format pathology-image image-format-converter image-format-conversion

Updated Nov 25, 2022
Python

TianyiFranklinWang / MIRROR

[IEEE TMI 2025] MIRROR: Multi-Modal Pathological Self-Supervised Representation Learning via Modality Alignment and Retention

ssl transcriptomics pathology self-supervised-learning pathology-image multi-modal-learning

Updated Dec 15, 2025
Python

cpathology / NucleiSegHE

H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net

deep-learning whole-slide-imaging computational-pathology biomedical-image-analysis pathology-image nuclei-segmentation pathomics hover-net he-staining

Updated Jul 30, 2024
Python

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