Mapping the MIMIC-III database to the OMOP schema

OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies

A web application to find patients, build cohorts and visualize health records

eds-scikit is a Python library providing tools to process and analyse OMOP data

OMOP standardization pipeline for ICU databases

Extracting Patients' information from clinical notes and export them to an OMOP CDM database.

The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)

Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data

We jailbreak your medical records and genomics data. For free.

Convenient and Reusable Rapid Omop Transformer.

Runs CQL phenotype definitions against an OMOP repository

Research with the National COVID Cohort Collaborative (N3C: https://ncats.nih.gov/n3c)

FHIR to OMOP using PySpark on AWS Glue

PCORnet Ontology to OMOP - beta!

An ETL pipeline to transform your EMP data to OMOP.

ETL engine to transform openEHR into OMOP. Loads OMOCL configuration files.

Patient 'omics data in OMOP format

A software toolkit for the interconversion of standard data models for phenotypic data

omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.

A documentation-centric ETL tool, implementing transformations of a number of common clincial datasets into the OMOP CDM.