Software for prediction of plasmid sequences in metagenomic assemblies

A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.

Teaching materials for SymbNET course: from MAGs to GEMs

ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data

Software to identify plasmid sequence data from metagenome using logistic regression and Minhash

Using a universal reference database, mixed assemblies, and cutting-edge software to give you the quantitative community phylogeny, a complete community functional analysis, and many strain(ish)-level high-quality bins.

Axolotl is a Python library for scalable genome analysis, addressing the gap in tools for handling the rapid growth of genomic data with easy parallel processing.

Software to identify known plasmid sequence from metagenomic assembly using Minhash

Statistical package for metaome denovo assembly results.

Synthetic PHasE Rate Estimator by single metagenome sequence

Growth Rate Index Calculater wrapped by CWL

clutering of MAGs (metagenome assembled genomes) into MGS (metagenomic species)

rplB/rpsC targeted analyses with shotgun metagenomes

Shotgun metagenomic analysis pipeline for SGE

a bash based evolautionary pangenome analysis

Microbial trait-based framework

Run multiple metagenome filtering programs using Docker containers

Arche: a functional-optimized annotator for microbial meta(genomes)