Python scripts for searching Pubmed using Biopython and working with eponymous terms
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Updated
Mar 9, 2021 - Python
Python scripts for searching Pubmed using Biopython and working with eponymous terms
Data Mining and Analysis Approach to Understand Covid-19 through PubMed Bibliographic and other MEDLINE metadata.
Chart the proportion of MeSH subheading in a given PubMed results set
Tabular representation of author-to-author relationships in the Medline dataset
Simple webservice that uses the NCBI API to grab baseline MEDLINE counts for geographically-tagged citations.
A simple console application that will go through the Medline Pubmed dataset and extract out a given set of fields.
Jan 2020 Medline json dataset, Description and image link.
Small webservice to grab by-year counts for a PubMed search
(Archived) My M.Sc. Bioinformatics project, using Bayes classification with search engine tricks, to expand a list of Medline IDs (e.g. a citation list) with more relevant articles.
The Corpus Storage System (CoStoSys) is a tool and abstraction layer for a PostgreSQL document database and part of the Jena Document Information System (JeDIS).
Use the MTI tooling from NCBI to map UMLS and MESH terms to arbitrary text.
VerifAI project is NGI Search funded initiative to build open-source biomedical generative question-answering engine with referenced and verifiable answers (using posteriori model)
Add a description, image, and links to the medline topic page so that developers can more easily learn about it.
To associate your repository with the medline topic, visit your repo's landing page and select "manage topics."