PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.
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Updated
Aug 14, 2024 - Python
PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.
Bayesian inference of trait evolution under a “fossilized” Brownian motion.
paleobuddy: an R package for simulating diversification dynamics, fossil records and phylogenies in R.
Data and analyses used in Moon & Stubbs, Communications Biology doi:10.1038/s42003-020-0779-6
Paper - A novel function of banded stripes to prevent cannibalism in snake-eating snakes
Infer phylogeny parameters with Deep Learning.
Data, code & figures used to assess global patterns of potential thermal niche filling
Code and data to reproduce all analyses and figures in Hill et al 2023
Supplementary code and data for "The paradox of predictability"
Analysing patterns of phenotypic adaptation across timescales and lineages
Analogy between the protracted birth death model and the classical birth death model
This repository contains the R code, data, and figures for the paper Vidal-García, M., O'Hanlon, J.C., Svenson, G.J, Umbers, K.D.L. (in press) The evolution of defensive displays in praying mantises. Proceedings of the Royal Society B
R codes for simulating and detecting punctuated evolution in any clades, from dinosaurs to viruses
Paper - Best practices for building and curating databases for comparative analyses
Macroevolutionary analyses of the Monodoreae tribe (Annonaceae) 🧬🌳🌍
Code and Figures for Souza Ferreira et al. (in prep)
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