Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
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Updated
Aug 14, 2024 - Python
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haplotype-assembly
Here are 8 public repositories matching this topic...
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
numpy
array
haplotypes
bayesian-inference
dna-sequences
genotyping
polyploidy
haplotype-assembly
haplotype-blocks
polyploid-genotyping
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Sep 18, 2024 - Python
Phasing and scaffolding polyploid genomes based on Pore-C or Hi-C.
genome
assembly
hi-c
scaffolding
hic
genome-assembly
phasing
polyploid
haplotype-assembly
diploid
genome-assembler
haplotype-resolved-assembly
pore-c
ultra-long
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Nov 1, 2024 - Python
A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.
haplotypes
genome-phasing
haplotype-assembly
phase-extender
haplotype-extension
phase-haplotypes
reference-haplotype-panel
haplotype-blocks
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Oct 30, 2024 - Jupyter Notebook
GAEseq: A Graph Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction
python
deep-learning
graph-neural-networks
haplotype-assembly
aaai2020
viral-quasispecies-reconstruction
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Jun 6, 2020 - C++
Automated Pipeline for Variant/Haplotype Calling and Filtering
bioinformatics
genomics
ngs
sequencing
haplotype-assembly
polyploid-genotyping
dosage-calling
multi-node-paralellism
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Nov 6, 2024 - Shell
A Novel Computational Method Based on Genetic Algorithms for Haplotype Assembly
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Apr 23, 2019 - C++
HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
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Aug 30, 2024 - Python
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