A Deep Learning Python Toolkit for Healthcare Applications.

Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM) domains. This repository contains complementary tooling in support of that specification.

Create "Table 1" for research papers in Python

📰 High-performance tool for negation and uncertainty detection in radiology reports

An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/

A Slicer extension to provide a GUI around pyradiomics

benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.

Toolkit for evaluating and monitoring AI models in clinical settings

Phoenix CTMS - the ultimative CTMS/PRS/CDMS.

🦠📇 Microbial genomes-to-report pipeline

this master thesis project is based on OpenAI Whisper with the goal to transcibe interviews

Aggregate and analyse information on clinical trials from public registers

Dataset for Coherent Topic Segmentation and Classification

Equations and tools for clinical pharmacokinetics

A workflow to allow Freesurfer recon-all to run on brain image with gliomas

A clinical trials data management framework

Sepsis Prediction using Clinical Data (PhysioNet Computing in Cardiology Challenge 2019)

An Interactive Tool for Natural Language Processing on Clinical Text

Generate beautiful summary tables from pandas dataframes