biological-data-analysis

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Here are 237 public repositories matching this topic...

MaxValue / Terpene-Profile-Parser-for-Cannabis-Strains

Sponsor

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Parser and database to index the terpene profile of different strains of Cannabis from online databases

Updated Apr 28, 2023
Python

opendilab / DI-bioseq

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Decision Intelligence platform for Biological Sequence Searching

reinforcement-learning biological-data-analysis biological-sequence-analysis

Updated Oct 10, 2022
Python

WhoIsJack / python-bioimage-analysis-tutorial

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A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.

python biology image-processing scikit-image biological-data-analysis image-analysis

Updated Feb 17, 2023
Jupyter Notebook

lmb-freiburg / Unet-Segmentation

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The U-Net Segmentation plugin for Fiji (ImageJ)

deep-learning fiji detection segmentation biological-data-analysis fiji-plugin unet-segmentation

Updated Oct 15, 2022
Java

chriscainx / mnnpy

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An implementation of MNN (Mutual Nearest Neighbors) correct in python.

biological-data-analysis batch-effects single-cell-analysis bioinformatics-tool mnn-correct mutual-nearest-neighbor

Updated Jan 9, 2023
Python

bobeobibo / phigaro

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Phigaro is a scalable command-line tool for predicting phages and prophages

bioinformatics genomics bioinformatics-pipeline biological-data-analysis bioinformatics-analysis genomic-data-analysis phage genomic-regions bioinformatics-tool phages prophage

Updated Jan 8, 2024
HTML

DevoLearn / devolearn

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Accelerate data driven research on embryos with deep learning models 🔬

opencv deep-learning pytorch biological-data-analysis image-segmentaion

Updated May 27, 2024
Python

SMRUCC / GCModeller

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GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language

bioinformatics genomics genome-annotation gcmodeller scibasic microsoft-visualbasic biological-data-analysis r-language single-cell virtualcell virtual-cell

Updated Jul 26, 2025
Visual Basic .NET

Pex2892 / PETAL

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PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis

python parallel python3 biological-data-analysis kegg kegg-pathway unict biological

Updated Dec 28, 2022
Python

fermo-metabolomics / FERMO

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Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.

python3 biological-data-analysis metabolomics mass-spectrometry exposomics

Updated May 16, 2025
HTML

BioJulia / BioSymbols.jl

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Nucleic and amino acid primitive types

bioinformatics biology computational-biology biological-data-analysis amino-acids nucleotides nucleic-acids biojulia

Updated Apr 25, 2025
Julia

TillMacher / TaxonTableTools

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TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data

bioinformatics graphical-interface biological-data-analysis edna biodiversity graphical-user-interface otus otu-table dna-metabarcoding biomonitoring metabarcoding-data

Updated Jul 15, 2025
Python

pylattice / pyLattice

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A python library for advanced lattice light-sheet image analysis

tracking bioinformatics biological-data-analysis image-analysis biophysics llsm lattice-light-sheet

Updated Sep 9, 2020
Jupyter Notebook

openvax / pepnet

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Neural networks for amino acid sequences

machine-learning neural-networks protein-sequences biological-data-analysis

Updated Feb 26, 2018
Python

vanvalenlab / deepcell-spots

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Deep Learning Library for Spot Detection

deep-learning tensorflow biological-data-analysis spot-detection

Updated Mar 15, 2024
Python

febos / SQUARNA

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RNA secondary structure prediction tool

Updated May 15, 2025
Jupyter Notebook

CBIIT / Misteli-Lab-CCR-NCI

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Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.

learning workflow r knime cancer biology tensorflow keras deep biological-data-analysis image-analysis genomic-data-analysis misteli-lab

Updated Jan 8, 2024
HTML

mozanunal / digital-filtering-of-ecg-signal

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Self-contained Jupyter notebook that walks through loading raw ECG, designing digital filters, visualising spectra, cleaning noise and extracting heart-rate features—perfect for teaching bio-signal processing.

fft biological-data-analysis digital-signal-processing iir iir-filters electrocardiography

Updated Nov 17, 2019
Jupyter Notebook

EnzoAndree / HmmPy

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A Pure-Python parser of HMMER3 output

hmm bioinformatics filter biological-data-analysis hmmer hmmscan python-parser

Updated Oct 14, 2024
Python

jdrudolph / photon

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PHOsphoproteomic dissecTiOn using Networks

bioinformatics biology proteomics biological-data-analysis signaling-pathways pathways phosphoproteomics phosphorylation signaling-networks

Updated Jan 25, 2021
Python

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biological-data-analysis

Here are 237 public repositories matching this topic...

MaxValue / Terpene-Profile-Parser-for-Cannabis-Strains

opendilab / DI-bioseq

WhoIsJack / python-bioimage-analysis-tutorial

lmb-freiburg / Unet-Segmentation

chriscainx / mnnpy

bobeobibo / phigaro

DevoLearn / devolearn

SMRUCC / GCModeller

Pex2892 / PETAL

fermo-metabolomics / FERMO

BioJulia / BioSymbols.jl

TillMacher / TaxonTableTools

pylattice / pyLattice

openvax / pepnet

vanvalenlab / deepcell-spots

febos / SQUARNA

CBIIT / Misteli-Lab-CCR-NCI

mozanunal / digital-filtering-of-ecg-signal

EnzoAndree / HmmPy

jdrudolph / photon

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