3d-genome
Here are 49 public repositories matching this topic...
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
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Aug 23, 2024 - Shell
A cool place to store your Hi-C
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Aug 26, 2024 - Python
Accurate and flexible loops calling tool for 3D genomic data.
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May 19, 2022 - Python
Extract 3D contacts (.pairs) from sequencing alignments
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May 3, 2024 - Python
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
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Mar 11, 2024 - Jupyter Notebook
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
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Aug 2, 2024 - Python
multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
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Jul 20, 2022 - Python
nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder
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Jul 5, 2024 - Python
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
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May 21, 2018 - Jupyter Notebook
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
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Sep 12, 2023 - Jupyter Notebook
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Nov 9, 2020 - Python
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
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Apr 8, 2024 - Jupyter Notebook
Visual exploration of large genome interaction matrices with interactive small multiples.
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Dec 1, 2021 - JavaScript
Data and the co-authored network I extracted for lab selection in 3D genome research field
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Dec 26, 2021 - Python
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
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Dec 16, 2018 - R
3DGB is a workflow to build 3D models of genomes from HiC data
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Jul 30, 2024 - Python
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Jun 16, 2023 - Python
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