10000 Issue 456 add rdf parser by meretp · Pull Request #469 · spdx/tools-python · GitHub
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Feb 22, 2023
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18e7063
delete rdflib as optional dependency as it is required
meretp Feb 1, 2023
cf5ee6a
delete installation from rdflib as the package is a required dependency
meretp Feb 1, 2023
298255e
move helper methods to also use it for the rdf parser
meretp Feb 9, 2023
9729b96
move actor_parser.py as it is format-agnostic and will be used for js…
meretp Feb 1, 2023
96498c0
[issue-456] add creation_info parser
meretp Jan 31, 2023
024fa89
[issue-456] add graph parsing functions
meretp Feb 1, 2023
b1a47f9
[issue-456] add snippet parser
meretp Feb 1, 2023
8466d2e
[issue-456] add checksum parser
meretp Feb 2, 2023
6d1e93e
[issue-456] add external document ref parser
meretp Feb 2, 2023
7087e36
[issue-456] add file parser
meretp Feb 2, 2023
1eb803b
[issue-456] add annotation parser
meretp Feb 2, 2023
6c8fdee
[issue-456] add package parser
meretp Feb 2, 2023
625e2a9
8000 [issue-456] add package verification code parser
meretp Feb 8, 2023
198f2a6
[issue-456] add helper method in casing_tools and move the module as …
meretp Feb 8, 2023
b3e274b
[issue-456] add parser for ExternalPackageRefs
meretp Feb 8, 2023
cea02ae
[issue-456] use enum helper method for primary package purpose
meretp Feb 8, 2023
d0238be
[issue-456] use enum helper method for annotation type
meretp Feb 8, 2023
fb105dc
[issue-456] use helper method for checksum algorithm
meretp Feb 8, 2023
58783f9
[issue-456] add relationship parser
meretp Feb 8, 2023
da33b14
[issue-456] use NamespaceManager to translate external document names…
meretp Feb 9, 2023
69d16aa
[issue-456] add extracted licensing info parser
meretp Feb 9, 2023
6652e4f
[issue-456] allow no assertion in package download location
meretp Feb 8, 2023
ce17ca6
[issue-456, refactor] extract method to get a unique value, sort methods
meretp Feb 9, 2023
9737fde
[issue-456, refactor] replace str_or_no_assertion_or_none with parse …
meretp Feb 9, 2023
9df9980
[issue-456] add license expression parser
meretp Feb 9, 2023
7b61c8f
[issue-456, refactor]
meretp Feb 9, 2023
9ecc373
[issue-456] parse list of license expressions
meretp Feb 9, 2023
1b8cf82
[issue-456] also parse URIRefs with the documents namespace as prefix…
meretp Feb 9, 2023
432a39f
[issue-456] add rdf parser to cli tool
meretp Feb 9, 2023
7a27e88
[issue-456] delete RDFExample from specVersion 2.1 as the tool curren…
meretp Feb 9, 2023
03ee53c
[issue-456, refactor] use generic helper methods instead of individua…
meretp Feb 9, 2023
446757c
[issue-456] move actor_parser.py as it is format-agnostic and used fo…
meretp Feb 9, 2023
86bc68c
[issue-456, refactor] adapt type hints, delete unused imports, rename…
meretp Feb 9, 2023
47e7db0
[issue-456] add helper method to remove prefix to support Python 3.7 …
meretp Feb 9, 2023
9681339
[issue-456] allow multiple members in ConjunctiveLicenseSet and Disju…
meretp Feb 10, 2023
8f9259b
[issue-456] strip parsed values by default to prevent new lines and l…
meretp Feb 10, 2023
9eb1206
[issue-456] fix parsing of externalPackageRef
meretp Feb 10, 2023
4ec5b3c
fix helper method
meretp Feb 15, 2023
c4d04d4
[review] use helper method for enums also for FileType
meretp Feb 20, 2023
c787280
[review, refactor] strip copyright texts, delete trailing comma
meretp Feb 20, 2023
6b70dda
[review] rewrite parse_ranges
meretp Feb 20, 2023
1d728b7
[review, refactor] let Constructor handle None values and use the mor…
meretp Feb 20, 2023
1cbe629
[review] refactor helper methods
meretp Feb 20, 2023
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[issue-456, refactor] replace str_or_no_assertion_or_none with parse …
…helper method

Signed-off-by: Meret Behrens <meret.behrens@tngtech.com>
  • Loading branch information
meretp committed Feb 22, 2023
commit 9737fde5a0ccc73ec988825fe6e57e65ed2b5f6a
12 changes: 6 additions & 6 deletions src/spdx/parser/rdf/file_parser.py
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@
from spdx.parser.logger import Logger
from spdx.parser.parsing_functions import construct_or_raise_parsing_error, raise_parsing_error_if_logger_has_messages
from spdx.parser.rdf.checksum_parser import parse_checksum
from spdx.parser.rdf.graph_parsing_functions import parse_literal, parse_spdx_id, str_to_no_assertion_or_none
from spdx.parser.rdf.graph_parsing_functions import parse_literal, parse_spdx_id, parse_literal_or_no_assertion_or_none
from spdx.rdfschema.namespace import SPDX_NAMESPACE


Expand All @@ -23,20 +23,20 @@ def parse_file(file_node: URIRef, graph: Graph, doc_namespace: str) -> File:
spdx_id = parse_spdx_id(file_node, doc_namespace, graph)
name = parse_literal(logger, graph, file_node, SPDX_NAMESPACE.fileName)
checksums = []
for (_,_,checksum_node) in graph.triples((file_node, SPDX_NAMESPACE.checksum, None)):
for (_, _, checksum_node) in graph.triples((file_node, SPDX_NAMESPACE.checksum, None)):
checksums.append(parse_checksum(checksum_node, graph))

file_types = []
for (_,_,file_type_ref) in graph.triples((file_node, SPDX_NAMESPACE.fileType, None)):
for (_, _, file_type_ref) in graph.triples((file_node, SPDX_NAMESPACE.fileType, None)):
try:
file_types.append(convert_uri_ref_to_file_type(file_type_ref))
except KeyError:
logger.append(f"Invalid FileType: {file_type_ref}")
license_comment = parse_literal(logger, graph, file_node, SPDX_NAMESPACE.licenseComments)
copyright_text = parse_literal(logger, graph, file_node, SPDX_NAMESPACE.copyrightText,
method_to_apply=str_to_no_assertion_or_none)
copyright_text = parse_literal_or_no_assertion_or_none(logger, graph, file_node, SPDX_NAMESPACE.copyrightText,
method_to_apply=str)
file_contributors = []
for (_,_,file_contributor) in graph.triples((file_node, SPDX_NAMESPACE.fileContributor,None)):
for (_, _, file_contributor) in graph.triples((file_node, SPDX_NAMESPACE.fileContributor, None)):
file_contributors.append(file_contributor.toPython())

notice_text = parse_literal(logger, graph, file_node, SPDX_NAMESPACE.noticeText)
Expand Down
8 changes: 0 additions & 8 deletions src/spdx/parser/rdf/graph_parsing_functions.py
Original file line number Diff line number Diff line change
Expand Up @@ -82,14 +82,6 @@ def parse_enum_value(enum_str: str, enum_class: Type[Enum]) -> Enum:
raise SPDXParsingError([f"Invalid value for {enum_class}: {enum_str}"])


def str_to_no_assertion_or_none(value: str) -> Union[str, SpdxNone, SpdxNoAssertion]:
if value == SPDX_NO_ASSERTION_STRING:
return SpdxNoAssertion()
if value == SPDX_NONE_STRING:
return SpdxNone()
return value


def parse_spdx_id(resource: URIRef, doc_namespace: str, graph: Graph) -> Optional[str]:
if not resource:
return None
Expand Down
11 changes: 6 additions & 5 deletions src/spdx/parser/rdf/package_parser.py
Original file line number Diff line number Diff line change
Expand Up @@ -23,16 +23,17 @@
from spdx.parser.logger import Logger
from spdx.parser.parsing_functions import raise_parsing_error_if_logger_has_messages, construct_or_raise_parsing_error
from spdx.parser.rdf.checksum_parser import parse_checksum
from spdx.parser.rdf.graph_parsing_functions import parse_spdx_id, parse_literal, str_to_no_assertion_or_none, \
parse_enum_value, parse_literal_or_no_assertion_or_none
from spdx.parser.rdf.graph_parsing_functions import parse_spdx_id, parse_literal, parse_enum_value, \
parse_literal_or_no_assertion_or_none
from spdx.rdfschema.namespace import SPDX_NAMESPACE, REFERENCE_NAMESPACE


def parse_package(package_node: URIRef, graph: Graph, doc_namespace: str) -> Package:
logger = Logger()
spdx_id = parse_spdx_id(package_node, doc_namespace, graph)
name = parse_literal(logger, graph, package_node, SPDX_NAMESPACE.name)
download_location = parse_literal_or_no_assertion_or_none(logger, graph, package_node, SPDX_NAMESPACE.downloadLocation,
download_location = parse_literal_or_no_assertion_or_none(logger, graph, package_node,
SPDX_NAMESPACE.downloadLocation,
method_to_apply=str)
checksums = []
for (_, _, checksum_node) in graph.triples((package_node, SPDX_NAMESPACE.checksum, None)):
Expand Down Expand Up @@ -63,8 +64,8 @@ def parse_package(package_node: URIRef, graph: Graph, doc_namespace: str) -> Pac
comment = parse_literal(logger, graph, package_node, RDFS.comment)
summary = parse_literal(logger, graph, package_node, SPDX_NAMESPACE.summary)
description = parse_literal(logger, graph, package_node, SPDX_NAMESPACE.description)
copyright_text = parse_literal(logger, graph, package_node, SPDX_NAMESPACE.copyrightText,
method_to_apply=str_to_no_assertion_or_none)
copyright_text = parse_literal_or_no_assertion_or_none(logger, graph, package_node, SPDX_NAMESPACE.copyrightText,
method_to_apply=str)
source_info = parse_literal(logger, graph, package_node, SPDX_NAMESPACE.sourceInfo)
primary_package_purpose = parse_literal(logger, graph, package_node, SPDX_NAMESPACE.primaryPackagePurpose,
prefix=SPDX_NAMESPACE.purpose_,
Expand Down
8 changes: 3 additions & 5 deletions src/spdx/parser/rdf/snippet_parser.py
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@
from spdx.model.snippet import Snippet
from spdx.parser.logger import Logger
from spdx.parser.parsing_functions import construct_or_raise_parsing_error, raise_parsing_error_if_logger_has_messages
from spdx.parser.rdf.graph_parsing_functions import parse_literal, str_to_no_assertion_or_none, parse_spdx_id
from spdx.parser.rdf.graph_parsing_functions import parse_literal, parse_spdx_id, parse_literal_or_no_assertion_or_none
from spdx.rdfschema.namespace import SPDX_NAMESPACE, POINTER_NAMESPACE


Expand All @@ -29,8 +29,8 @@ def parse_snippet(snippet_node: URIRef, graph: Graph, doc_namespace: str) -> Sni
line_range = parse_ranges(snippet_node, graph, POINTER_NAMESPACE.LineCharPointer, POINTER_NAMESPACE.lineNumber)

license_comment = parse_literal(logger, graph, snippet_node, SPDX_NAMESPACE.licenseComments)
copyright_text = parse_literal(logger, graph, snippet_node, SPDX_NAMESPACE.copyrightText,
method_to_apply=str_to_no_assertion_or_none)
copyright_text = parse_literal_or_no_assertion_or_none(logger, graph, snippet_node, SPDX_NAMESPACE.copyrightText,
method_to_apply=str)
comment = parse_literal(logger, graph, snippet_node, RDFS.comment)
name = parse_literal(logger, graph, snippet_node, SPDX_NAMESPACE.name)
attribution_texts = []
Expand Down Expand Up @@ -65,5 +65,3 @@ def parse_range_value(graph: Graph, pointer_node: Node, predicate: Node) -> Opti
if value:
value = int(value)
return value


12 changes: 1 addition & 11 deletions tests/spdx/parser/rdf/test_graph_parsing_function.py
Original file line number Diff line number Diff line change
Expand Up @@ -11,17 +11,7 @@
import pytest
from rdflib import URIRef, Graph, Namespace

from spdx.model.spdx_no_assertion import SpdxNoAssertion
from spdx.model.spdx_none import SpdxNone
from spdx.parser.rdf.graph_parsing_functions import str_to_no_assertion_or_none, parse_spdx_id


@pytest.mark.parametrize("value,expected", [("NOASSERTION", SpdxNoAssertion()), ("NONE", SpdxNone()), ("test", "test"),
("Noassertion", "Noassertion")])
def test_str_to_no_assertion_or_none(value, expected):
result = str_to_no_assertion_or_none(value)

assert result == expected
from spdx.parser.rdf.graph_parsing_functions import parse_spdx_id


@pytest.mark.parametrize("resource,doc_namespace,ext_namespace_mapping,expected",
Expand Down
0