8000 MAINT Remove loguniform fix, use scipy.stats instead, bump scipy version and Ubuntu version in CI by betatim · Pull Request #24665 · scikit-learn/scikit-learn · GitHub
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MAINT Remove loguniform fix, use scipy.stats instead, bump scipy version and Ubuntu version in CI #24665

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Merged
merged 12 commits into from
Mar 23, 2023
Merged

MAINT Remove loguniform fix, use scipy.stats instead, bump scipy version and Ubuntu version in CI #24665

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acda7e4
Remove loguniform fix, use scipy.stats instead
betatim Oct 14, 2022
15ac96a
Bump scipy to v1.5.0
betatim Oct 14, 2022
d16c759
Merge branch 'main' into remove-loguniform-fix
betatim Feb 7, 2023
a2e28c3
Remvove obsolete loguniform fix
betatim Feb 7, 2023
ab355e6
Updated environment and lock files for scipy 1.5
betatim Feb 7, 2023
0539b89
Merge branch 'main' into remove-loguniform-fix
ogrisel Feb 14, 2023
98162bc
Update scipy version in README and pyproject.toml
betatim Feb 14, 2023
a8fa69c
Merge remote-tracking branch 'origin/remove-loguniform-fix' into remo…
betatim Feb 14, 2023
ad92267
Remove PyPy specific install note
betatim Feb 15, 2023
202acbd
Merge branch 'main' into remove-loguniform-fix
betatim Mar 23, 2023
8ac6611
Update Ubuntua ATLAS CI to use 22.04
betatim Mar 23, 2023
153aee9
Change job name
betatim Mar 23, 2023
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2 changes: 1 addition & 1 deletion README.rst
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Expand Up @@ -34,7 +34,7 @@

.. |PythonMinVersion| replace:: 3.8
.. |NumPyMinVersion| replace:: 1.17.3
.. |SciPyMinVersion| replace:: 1.3.2
.. |SciPyMinVersion| replace:: 1.5.0
.. |JoblibMinVersion| replace:: 1.1.1
.. |ThreadpoolctlMinVersion| replace:: 2.0.0
.. |MatplotlibMinVersion| replace:: 3.1.3
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21 changes: 17 additions & 4 deletions azure-pipelines.yml
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Expand Up @@ -166,8 +166,8 @@ jobs:

- template: build_tools/azure/posix.yml
parameters:
name: Linux
vmImage: ubuntu-20.04
name: Ubuntu_Atlas
vmImage: ubuntu-22.04
dependsOn: [linting, git_commit, Ubuntu_Jammy_Jellyfish]
# Runs when dependencies succeeded or skipped
condition: |
Expand All @@ -177,13 +177,26 @@ jobs:
)
matrix:
# Linux environment to test that scikit-learn can be built against
# versions of numpy, scipy with ATLAS that comes with Ubuntu Focal 20.04
# i.e. numpy 1.17.4 and scipy 1.3.3
# versions of numpy, scipy with ATLAS that comes with Ubuntu Jammy Jellyfish 22.04
# i.e. numpy 1.21.5 and scipy 1.8.0
ubuntu_atlas:
DISTRIB: 'ubuntu'
LOCK_FILE: './build_tools/azure/ubuntu_atlas_lock.txt'
COVERAGE: 'false'
SKLEARN_TESTS_GLOBAL_RANDOM_SEED: '1' # non-default seed

- template: build_tools/azure/posix.yml
parameters:
name: Linux
vmImage: ubuntu-20.04
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@lorentzenchr lorentzenchr Mar 23, 2023

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Suggested change
vmImage: ubuntu-20.04
vmImage: ubuntu-22.04

? I‘m confused.

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@betatim betatim Mar 23, 2023

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I wasn't sure if we want to upgrade all Ubuntu based tests or just the one using ATLAS. In the end I went with "just the ATLAS one" because for the other ones we can still run on 20.04. I think it is nice to keep old versions and test against them for as long as possible/only upgrade when you have to.

dependsOn: [linting, git_commit, Ubuntu_Jammy_Jellyfish]
# Runs when dependencies succeeded or skipped
condition: |
and(
not(or(failed(), canceled())),
not(contains(dependencies['git_commit']['outputs']['commit.message'], '[ci skip]'))
)
matrix:
# Linux + Python 3.8 build with OpenBLAS
py38_conda_defaults_openblas:
6D47 DISTRIB: 'conda'
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2 changes: 1 addition & 1 deletion build_tools/azure/py38_conda_defaults_openblas_environment.yml
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Expand Up @@ -7,7 +7,7 @@ dependencies:
- python=3.8
- numpy=1.17.3 # min
- blas[build=openblas]
- scipy=1.3.2 # min
- scipy=1.5.0 # min
- joblib
- threadpoolctl=2.2.0
- matplotlib=3.1.3 # min
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4 changes: 2 additions & 2 deletions build_tools/azure/py38_conda_defaults_openblas_linux-64_conda.lock
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@@ -1,6 +1,6 @@
# Generated by conda-lock.
# platform: linux-64
# input_hash: b2abf7313453f4c215a430bad6b188860065331448105408976274d4b5370848
# input_hash: 76d585ef182a71dd7720b12def6ce000de54a0d8dbf575b74d82033ad81e8cc2
@EXPLICIT
https://repo.anaconda.com/pkgs/main/linux-64/_libgcc_mutex-0.1-main.conda#c3473ff8bdb3d124ed5ff11ec380d6f9
https://repo.anaconda.com/pkgs/main/linux-64/blas-1.0-openblas.conda#9ddfcaef10d79366c90128f5dc444be8
Expand Down Expand Up @@ -92,7 +92,7 @@ https://repo.anaconda.com/pkgs/main/linux-64/pyqt5-sip-12.11.0-py38h6a678d5_1.co
https://repo.anaconda.com/pkgs/main/noarch/pytest-cov-3.0.0-pyhd3eb1b0_0.conda#bbdaac2947f507399816d509107945c2
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https://repo.anaconda.com/pkgs/main/linux-64/scipy-1.3.2-py38he2b7bc3_0.conda#a9df91d5a41c1f39524fc8a53c56bc29
https://repo.anaconda.com/pkgs/main/linux-64/scipy-1.5.0-py38habc2bb6_0.conda#a27a97fc2377ab74cbd33ce22d3c3353
https://repo.anaconda.com/pkgs/main/linux-64/pyamg-4.2.3-py38h79cecc1_0.conda#6e7f4f94000b244396de8bf4e6ae8dc4
https://repo.anaconda.com/pkgs/main/linux-64/pyqt-5.15.7-py38h6a678d5_1.conda#62232dc285be8e7e85ae9596d89b3b95
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4 changes: 2 additions & 2 deletions build_tools/azure/py38_conda_forge_mkl_win-64_conda.lock
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Expand Up @@ -37,7 +37,7 @@ https://conda.anaconda.org/conda-forge/win-64/libbrotlienc-1.0.9-hcfcfb64_8.tar.
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https://conda.anaconda.org/conda-forge/win-64/python-3.8.16-h4de0772_1_cpython.conda#461d9fc92cfde68f2ca7ef0988f6326a
Expand Down Expand Up @@ -122,7 +122,7 @@ https://conda.anaconda.org/conda-forge/win-64/qt-main-5.15.8-h88fe7eb_7.conda#e3
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https://conda.anaconda.org/conda-forge/win-64/contourpy-1.0.7-py38hb1fd069_0.conda#6b53200dddcec578cdd90cac146eeadd
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22 changes: 12 additions & 10 deletions build_tools/azure/py38_conda_forge_openblas_ubuntu_2204_linux-64_conda.lock
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Expand Up @@ -41,7 +41,6 @@ https://conda.anaconda.org/conda-forge/linux-64/libogg-1.3.4-h7f98852_1.tar.bz2#
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https://conda.anaconda.org/conda-forge/linux-64/libopus-1.3.1-h7f98852_1.tar.bz2#15345e56d527b330e1cacbdf58676e8f
https://conda.anaconda.org/conda-forge/linux-64/libtool-2.4.7-h27087fc_0.conda#f204c8ba400ec475452737094fb81d52
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https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.3.0-h0b41bf4_0.conda#0d4a7508d8c6c65314f2b9c1f56ad408
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-h166bdaf_4.tar.bz2#f3f9de449d32ca9b9c66a22863c96f41
Expand All @@ -66,7 +65,7 @@ https://conda.anaconda.org/conda-forge/linux-64/jack-1.9.22-h11f4161_0.conda#504
https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-16_linux64_openblas.tar.bz2#d9b7a8639171f6c6fa0a983edabcfe2b
https://conda.anaconda.org/conda-forge/linux-64/libbrotlidec-1.0.9-h166bdaf_8.tar.bz2#4ae4d7795d33e02bd20f6b23d91caf82
https://conda.anaconda.org/conda-forge/linux-64/libbrotlienc-1.0.9-h166bdaf_8.tar.bz2#04bac51ba35ea023dc48af73c1c88c25
https://conda.anaconda.org/conda-forge/linux-64/libcap-2.66-ha37c62d_0.tar.bz2#2d7665abd0997f1a6d4b7596bc27b657
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https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1
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Expand All @@ -75,17 +74,17 @@ https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.39-h753d276_0.conda#e
https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.40.0-h753d276_0.tar.bz2#2e5f9a37d487e1019fd4d8113adb2f9f
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Expand All @@ -95,9 +94,10 @@ https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-16_linux64_openb
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Expand Down Expand Up @@ -125,7 +125,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libclang13-15.0.7-default_h3e3d5
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Expand Down Expand Up @@ -159,7 +159,7 @@ https://conda.anaconda.org/conda-forge/noarch/importlib_resources-5.12.0-pyhd8ed
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Expand All @@ -172,17 +172,19 @@ https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-6.0.0-h8e241bc_0.conda#
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