8000 GH-102670: Use sumprod() to simplify, speed up, and improve accuracy of statistics functions by rhettinger · Pull Request #102649 · python/cpython · GitHub
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GH-102670: Use sumprod() to simplify, speed up, and improve accuracy of statistics functions #102649

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Merged
merged 11 commits into from
Mar 14, 2023
Merged

GH-102670: Use sumprod() to simplify, speed up, and improve accuracy of statistics functions #102649

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3f2fd8d
Use sumprod() to speed-up and improve accuracy of correlation()
rhettinger Mar 13, 2023
3241045
Only compute differences once
rhettinger Mar 13, 2023
52c7584
Use sumprod() in covariance().
rhettinger Mar 13, 2023
16b2745
Use sumprod() in linear_regression().
rhettinger Mar 13, 2023
b9eeee5
Can skip centering if xbar or ybar is already zero
rhettinger Mar 13, 2023
c51e520
Factor-out common logic in linear_regression
rhettinger Mar 13, 2023
39be9f8
Factor-out common logic in linear_regression
rhettinger Mar 13, 2023
a448615
Use generator for y array in linear_regression()
rhettinger Mar 13, 2023
c9a4e4d
Coerce result to a float
rhettinger Mar 13, 2023
5fe1be5
Add test for the result type being a float.
rhettinger Mar 13, 2023
45ffe7e
Add blurb
rhettinger Mar 13, 2023
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Factor-out common logic in linear_regression
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@rhettinger
rhettinger committed Mar 13, 2023
commit c51e520b7c8f9f8e14ca6b2537de46f8e42cada2
15 changes: 8 additions & 7 deletions Lib/statistics.py
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Expand Up @@ -1074,13 +1074,14 @@ def correlation(x, y, /, *, method='linear'):
start = (n - 1) / -2 # Center rankings around zero
x = _rank(x, start=start)
y = _rank(y, start=start)
xbar = fsum(x) / n
ybar = fsum(y) / n
centered_x = [xi - xbar for xi in x] if xbar else x
centered_y = [yi - ybar for yi in y] if ybar else y
sxy = sumprod(centered_x, centered_y)
sxx = sumprod(centered_x, centered_x)
syy = sumprod(centered_y, centered_y)
else:
xbar = fsum(x) / n
ybar = fsum(y) / n
x = [xi - xbar for xi in x]
y = [yi - ybar for yi in y]
sxy = sumprod(x, y)
sxx = sumprod(x, x)
syy = sumprod(y, y)
try:
return sxy / sqrt(sxx * syy)
except ZeroDivisionError:
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0