8000 modify wf actions `.yml` by yibeichan · Pull Request #35 · nipype/pydra-tutorial · GitHub
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modify wf actions .yml #35

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modify wf actions .yml #35

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57b27ed
rename the sixth tutorial
yibeichan Jul 27, 2022
02a852d
update 6th tutorial title
yibeichan Jul 27, 2022
0f6652c
create 7th tutorial
yibeichan Jul 27, 2022
4b4ed06
add datalad
yibeichan Jul 27, 2022
4ca4477
add 7th tutorial
yibeichan Aug 9, 2022
435d771
add 7th tutorial
yibeichan Aug 9, 2022
45b849f
fix typo
yibeichan Aug 11, 2022
bf37cd3
add test notebook
yibeichan Aug 11, 2022
b6f9fb0
testing
yibeichan Aug 12, 2022
e6c8db7
testing
yibeichan Aug 16, 2022
2c7e5fc
test workflow
yibeichan Aug 20, 2022
58417ba
update tests
yibeichan Aug 20, 2022
3e5b0de
add correct notebook
yibeichan Sep 1, 2022
9a2e9af
add correct notebook
yibeichan Sep 1, 2022
7363d70
add correct notebook
yibeichan Sep 1, 2022
8d0ef32
improve the workflow
yibeichan Sep 1, 2022
3c142c1
fix minor errors
yibeichan Sep 1, 2022
43f31f0
fix subj_id index issue
yibeichan Sep 1, 2022
412f311
update notebooks.yml
yibeichan Sep 1, 2022
02a90bf
update gh-pages.yml
yibeichan Sep 1, 2022
bc67a9e
Merge branch 'git-wf-actions' of github.com:Yibeichan/pydra-tutorial …
yibeichan Sep 1, 2022
a87403f
modify wf actions
yibeichan Sep 1, 2022
ef0ef26
fix incompatible packages
yibeichan Sep 1, 2022
dc36fa2
fix minor errors
yibeichan Sep 1, 2022
74c0c9b
Update .github/workflows/notebooks.yml
effigies Sep 2, 2022
08a68e7
Update .github/workflows/gh-pages.yml
effigies Sep 2, 2022
8ea7ae6
Update .github/workflows/notebooks.yml
effigies Sep 2, 2022
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fix minor errors
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@yibeichan
yibeichan committed Sep 1, 2022
commit 3c142c12b700a4c33be357fa0f6cdbc6380e795c
6 changes: 3 additions & 3 deletions notebooks/7_twolevel_glm_nilearn.md
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Expand Up @@ -629,7 +629,7 @@ Now, let's connect all tasks and workflows together.

Here we randomly choose **5** subjects to perform the analysis.

For computational time, we set `n_perm=1`.
For computational time, we set `n_perm=100`.

```{code-cell} ipython3
wf = Workflow(
Expand All @@ -640,7 +640,7 @@ wf = Workflow(
wf.inputs.n_subj = 5

# randomly choose subjects
wf_firstlevel.inputs.subj_id = random.sample(range(16), wf.inputs.n_subj)
wf_firstlevel.inputs.subj_id = random.sample(range(1,17), wf.inputs.n_subj)
wf_firstlevel.inputs.tr = 2.3
wf_firstlevel.inputs.n_scans = 300
wf_firstlevel.inputs.hrf_model = 'glover'
Expand Down Expand Up @@ -691,7 +691,7 @@ wf.add(
smoothing_fwhm = 5.0,
design_matrix = wf.wf_secondlevel.lzout.second_level_designmatrix,
firstlevel_contrast = wf.wf_firstlevel.lzout.first_level_contrast,
n_perm = 10,
n_perm = 100,
)
)

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