8000 FIX: Copy interface before running to prevent task mutation on run by effigies · Pull Request #12 · nipype/pydra-nipype1 · GitHub
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FIX: Copy interface before running to prevent task mutation on run #12

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FIX: Copy interface before running to prevent task mutation on run #12

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5a746c0
FIX: Copy interface before running to prevent task mutation on run
effigies Apr 15, 2021
3c4cc88
FIX: Use deepcopy
effigies Apr 15, 2021
9b2ff04
Merge branch 'main' into fix/no_mutate_on_run
effigies Oct 19, 2022
7fd9e72
Merge branch 'main' into fix/no_mutate_on_run
effigies Mar 23, 2024
0709a5e
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 23, 2024
1df2696
Merge branch 'main' into fix/no_mutate_on_run
effigies May 20, 2024
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Merge branch 'main' into fix/no_mutate_on_run
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@effigies
effigies authored Mar 23, 2024
commit 7fd9e72e00b3ad42d730aec8bcf5f714eaa479ee
7 changes: 3 additions & 4 deletions pydra/tasks/nipype1/utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -69,10 +69,9 @@ def __init__(
)
self.output_spec = traitedspec_to_specinfo(interface._outputs())

def _run_task(self):
inputs = attr.asdict(
self.inputs, filter=lambda a, v: v is not attr.NOTHING, retain_collection_types=True
)

def _run_task(self, environment=None):
inputs = attrs.asdict(self.inputs, filter=lambda a, v: v is not attrs.NOTHING)
node = nipype.Node(deepcopy(self._interface), base_dir=self.output_dir, name=self.name)
node.inputs.trait_set(**inputs)
res = node.run()
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