10000 Working on adding entity_message by rcali21 · Pull Request #593 · nipype/pydra · GitHub
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Merged
merged 39 commits into from
Nov 27, 2022
Merged

Working on adding entity_message #593

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5b05be5
Working on adding entity_message
Nov 2, 2022
1f236f9
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 2, 2022
162b03b
Added GeneratedBy to entity using a path grabber
Nov 2, 2022
5a60569
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 2, 2022
1cc91ef
GeneratedBy populated with path grabber
Nov 2, 2022
ca9d0ea
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 2, 2022
d0770b4
Implemented AtLocation field, tested with input_spec
Nov 3, 2022
3462466
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 3, 2022
096cbb4
Updated tests
Nov 4, 2022
ae543ae
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 4, 2022
ef25055
Removed unused import
Nov 4, 2022
70f15ee
flake8
Nov 4, 2022
7ab3ddf
Updated tests, accounting for duplicate key names
Nov 7, 2022
c4f21af
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 7, 2022
fd625a9
Updated tests, accounting for duplicate key names
Nov 7, 2022
4d447d1
Fixed test
Nov 7, 2022
58e4767
Fixed tests
Nov 7, 2022
e355f21
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 7, 2022
a8c3a37
Added atlocation in tests to meet coverage
Nov 7, 2022
175662f
Added file test, atlocation test, hash test
Nov 18, 2022
0759ab1
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 18, 2022
6c3cded
Updated ent. uuid, input_file checks
Nov 18, 2022
7895319
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pre-commit-ci[bot] Nov 18, 2022
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Refactored, cleaned up old comments
Nov 20, 2022
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[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 20, 2022
704d52e
Refactored, cleaned up old comments
Nov 20, 2022
2912ee6
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 20, 2022
dfecb8a
Added dict for atlocation, digest tracking, added tests
Nov 22, 2022
9be04d2
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 22, 2022
7d3845e
Updated entity_message to be collected per input
Nov 23, 2022
230d0ef
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 23, 2022
d1e3c58
Addressed all issues in audit
Nov 24, 2022
9d037df
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 24, 2022
e73b15b
Addressed all issues in audit
Nov 24, 2022
bf593de
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 24, 2022
118b7cd
Fixed tests
Nov 26, 2022
15a7542
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 26, 2022
662ade1
Added two file test back
Nov 27, 2022
19beeba
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 27, 2022
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pre-commit-ci[bot] committed Nov 24, 2022
commit bf593de26f5dafec57c50d239064dd2945006ad4
2 changes: 1 addition & 1 deletion pydra/engine/audit.py
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Expand Up @@ -184,7 +184,7 @@ def audit_task(self, task):
file_hash = hash_file(input_path)
entity_id = f"uid:{gen_uuid()}"
entity_message = {
"@id": entity_id,
"@id": entity_id,
"Label": input_name,
"AtLocation": input_path,
"GeneratedBy": None,
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