8000 Bugfixes with package generation by tclose · Pull Request #16 · nipype/nipype2pydra · GitHub
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Bugfixes with package generation #16

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Merged
merged 10 commits into from
Mar 20, 2024
Merged

Bugfixes with package generation #16

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3e142f4
[skip ci] updated README template
tclose Mar 19, 2024
71ea79c
updated generate_sample_data to match latest syntax
tclose Mar 19, 2024
b79a412
added tests to fileformats extras
tclose Mar 19, 2024
39674f7
set fileset inputs to mock when None in doctests
tclose Mar 19, 2024
ece3257
added post release trigger jobs
tclose Mar 19, 2024
317b43b
configured secret to be saved in env var rather than output
tclose Mar 19, 2024
2934fd3
added fileformats packages to template resources
tclose Mar 19, 2024
89f9b77
skip generated python files in pkg-gen templates
tclose Mar 19, 2024
7c05667
altered import location of show_cli_trace
tclose Mar 19, 2024
8978065
renamed conftest resource template to conftest_ to avoid confusing th…
tclose Mar 19, 2024
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configured secret to be saved in env var rather than output
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@tclose
tclose committed Mar 19, 2024
commit 317b43bb45d387f2bd0ffdb15d291351f6dc2546
10 changes: 6 additions & 4 deletions .github/workflows/ci-cd.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -125,6 +125,8 @@ jobs:
- ants
- fsl
- freesurfer
env:
SECRET: ""
steps:
- name: Get secret for corresponding repo
id: get_secret
Expand All @@ -138,13 +140,13 @@ jobs:
elif [ "${{ matrix.repo }}" == "freesurfer" ]; then
SECRET="${{ secrets.FREESURFER_PAT }}"
fi
echo "SECRET=$SECRET" >> $GITHUB_OUTPUT
echo "SECRET=$SECRET" >> $GITHUB_ENV

- name: Trigger post-release on downstream repos
if: github.event_name == 'release' && steps.get_secret.outputs.SECRET
if: github.event_name == 'release' && env.SECRET
run: |
curl -XPOST -u "${{ steps.get_secret.outputs.SECRET }}" -H "Accept: application/vnd.github.everest-preview+json" \
curl -XPOST -u "${{ env.SECRET }}" -H "Accept: application/vnd.github.everest-preview+json" \
"https://api.github.com/repos/nipype/pydra-${{ matrix.repo }}/dispatches" \
-d '{"event_type": "create-post-release"}'
env:
PAT: ${{ steps.get_secret.outputs.SECRET }}
PAT: ${{ env.SECRET }}
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