10000 FIX: Address numpy and traits deprecations by effigies · Pull Request #3699 · nipy/nipype · GitHub
[go: up one dir, main page]
Skip to content

FIX: Address numpy and traits deprecations #3699

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 14 commits into from
Nov 18, 2024
Merged

FIX: Address numpy and traits deprecations #3699

Changes from 1 commit
Commits
Show all changes
14 commits
Select commit Hold shift + click to select a range
73e47b5
MNT: Drop numpy 2.0 limit
effigies Nov 18, 2024
b41fb1c
fix: Numpy stopped accepting b-strings as savetxt args
effigies Nov 18, 2024
ea4164c
fix: Replace recfromcsv to genfromtxt
effigies Nov 18, 2024
b713b4d
fix(traits): Replace deprecated traits.List$Sub with traits.List($Sub)
effigies Nov 18, 2024
eb6ad74
MNT: Add tox config
effigies Nov 18, 2024
cb32982
test: Depend on pytest-xdist
effigies Nov 18, 2024
a150eeb
chore(ci): Run GHA with tox
effigies Nov 18, 2024
c51abf8
FIX: Set legacy printoptions in doctests
effigies Nov 18, 2024
1d324ad
chore: Configure pytest globally
effigies Nov 18, 2024
8abddf9
chore: Update minimum dependencies, test them
effigies Nov 18, 2024
ddfb69c
fix: Replace pkg_resources with acres
effigies Nov 18, 2024
d986f53
Update minimum networkx, nibabel
effigies Nov 18, 2024
8e27123
fix: Handle new/old networkx graph emissions
effigies Nov 18, 2024
ddb73ac
chore(ci): Replace contrib.yml with tox
effigies Nov 18, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
fix: Replace recfromcsv to genfromtxt
  • Loading branch information
@effigies
effigies committed Nov 18, 2024
commit ea4164c2c904b3b3c6f940e4e27589cdfc33de19
4 changes: 3 additions & 1 deletion nipype/interfaces/nitime/tests/test_nitime.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -51,7 +51,9 @@ def test_coherence_analysis(tmpdir):

# This is the nitime analysis:
TR = 1.89
data_rec = np.recfromcsv(example_data("fmri_timeseries.csv"))
data_rec = np.genfromtxt(
example_data("fmri_timeseries.csv"), delimiter=',', names=True
)
roi_names = np.array(data_rec.dtype.names)
n_samples = data_rec.shape[0]
data = np.zeros((len(roi_names), n_samples))
Expand Down
0