8000 ENH: Update PETsurfer interface by mnoergaard · Pull Request #3602 · nipy/nipype · GitHub
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ENH: Update PETsurfer interface #3602

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Merged
merged 9 commits into from
Mar 20, 2024
Merged

ENH: Update PETsurfer interface #3602

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bd9d406
GTMPVC: add extra outputs to outputspec and GTMPVC class
mnoergaard Sep 8, 2023
ad5e559
FIX: update description of GTMPVC interface
mnoergaard Sep 8, 2023
f66b50f
ENH: update naming of MRTM interface to MRTM1 (more clear definition)
mnoergaard Sep 8, 2023
4df6a4b
ENH: update LoganRef interface to Logan (reference modeling is not us…
mnoergaard Sep 8, 2023
15eb049
ENH: add BP clipping arguments to mri_glmfit
mnoergaard Sep 8, 2023
0df01a7
formatted with black
bendhouseart Mar 19, 2024
ced00b1
Merge pull request #5 from bendhouseart/update_petsurfer
mnoergaard Mar 20, 2024
75f0ba0
TEST: Update tests
effigies Mar 20, 2024
6b7bda4
Merge remote-tracking branch 'upstream/master' into update_petsurfer
effigies Mar 20, 2024
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ENH: update naming of MRTM interface to MRTM1 (more clear definition)
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@mnoergaard @effigies
mnoergaard authored and effigies committed Mar 4, 2024
commit f66b50ff84fb993b47b6493af83ecae4980dc9b6
8 changes: 4 additions & 4 deletions nipype/interfaces/freesurfer/petsurfer.py
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Original file line number Diff line number Diff line change
Expand Up @@ -581,7 +581,7 @@ def _list_outputs(self):
return outputs


class MRTMInputSpec(GLMFitInputSpec):
class MRTM1InputSpec(GLMFitInputSpec):
mrtm1 = traits.Tuple(
File(exists=True),
File(exists=True),
Expand All @@ -591,20 +591,20 @@ class MRTMInputSpec(GLMFitInputSpec):
)


class MRTM(GLMFit):
class MRTM1(GLMFit):
"""Perform MRTM1 kinetic modeling.

Examples
--------
>>> mrtm = MRTM()
>>> mrtm = MRTM1()
>>> mrtm.inputs.in_file = 'tac.nii'
>>> mrtm.inputs.mrtm1 = ('ref_tac.dat', 'timing.dat')
>>> mrtm.inputs.glm_dir = 'mrtm'
>>> mrtm.cmdline
'mri_glmfit --glmdir mrtm --y tac.nii --mrtm1 ref_tac.dat timing.dat'
"""

input_spec = MRTMInputSpec
input_spec = MRTM1InputSpec


class MRTM2InputSpec(GLMFitInputSpec):
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0