8000 Fix bugs with `fsl_out=True` and `lta_out=True` by jadecci · Pull Request #3583 · nipy/nipype · GitHub
[go: up one dir, main page]
Skip to content

Fix bugs with fsl_out=True and lta_out=True #3583

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 5 commits into from
Jul 5, 2023
Merged

Fix bugs with fsl_out=True and lta_out=True #3583

Changes from 1 commit
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
86cf4ac
'fsl_out' and 'lta_out' options in TKregister2 should check and add a…
jadecci Jun 26, 2023
bf4bdcb
Add contribution
Jun 26, 2023
9e57827
Simplify fix for Tkregister2._format_arg
jadecci Jun 26, 2023
c515dc0
Update .zenodo.json
jadecci Jul 5, 2023
46554ac
Merge branch 'master' into master
effigies Jul 5, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Next Next commit
'fsl_out' and 'lta_out' options in TKregister2 should check and add a… 
…rguments with 'fsl_file' and 'lta_file' respectively
  • Loading branch information
@jadecci
jadecci committed Jun 26, 2023
commit 86cf4acdc969a47d5ad8d738925e1742457e4374
10 changes: 8 additions & 2 deletions nipype/interfaces/freesurfer/utils.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1967,8 +1967,14 @@ def _format_arg(self, name, spec, value):
if name == "lta_in" and self.inputs.invert_lta_in:
spec = "--lta-inv %s"
if name in ("fsl_out", "lta_out") and value is True:
value = self._list_outputs()[name]
return super(Tkregister2, self)._format_arg(name, spec, value)
if name == 'fsl_out':
name_actual = 'fsl_file'
if name == 'lta_out':
name_actual = 'lta_file'
value = self._list_outputs()[name_actual]
return super(Tkregister2, self)._format_arg(name_actual, spec, value)
else:
return super(Tkregister2, self)._format_arg(name, spec, value)

def _list_outputs(self):
outputs = self._outputs().get()
Expand Down
0