8000 codespell: config, workflow, typos fixed by yarikoptic · Pull Request #3549 · nipy/nipype · GitHub
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codespell: config, workflow, typos fixed #3549

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Merged
merged 14 commits into from
Apr 17, 2023
Merged

codespell: config, workflow, typos fixed #3549

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4afb000
Add github action to codespell master on push and PRs
yarikoptic Mar 9, 2023
8d8ef53
Add rudimentary .codespellrc
yarikoptic Mar 9, 2023
912c700
custom skips
yarikoptic Mar 9, 2023
761b620
[DATALAD RUNCMD] rename hasnt var into hasnot to make codespell happier
yarikoptic Mar 9, 2023
f6965c8
Some ambigous typos fixes
yarikoptic Mar 9, 2023
abb0ecf
[DATALAD RUNCMD] rename strack var in doc to make codespell happier
yarikoptic Mar 9, 2023
576bfc4
rename fo to f to please codespell for a file object
yarikoptic Mar 9, 2023
694b79e
Some ambigous typos fixes
yarikoptic Mar 9, 2023
48acdf8
ignores found in throughout review of diff
yarikoptic Mar 9, 2023
6e8285e
[DATALAD RUNCMD] rename fastr var in doc to make codespell happier
yarikoptic Mar 9, 2023
5b5d9cf
ignores found in throughout review of diff
yarikoptic Mar 9, 2023
536d402
add ignore on Comision
yarikoptic Mar 9, 2023
d54532d
8000 [DATALAD RUNCMD] Run codespell throughout
yarikoptic Mar 9, 2023
318f179
Better rename: testin -> test_in
effigies Apr 17, 2023
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Some ambigous typos fixes
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@yarikoptic
yarikoptic committed Mar 9, 2023
commit 694b79ea82af146e95e7391f561d6cbd1cecc7ca
2 changes: 1 addition & 1 deletion nipype/interfaces/ants/registration.py
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Expand Up @@ -865,7 +865,7 @@ class Registration(ANTSCommand):
--write-composite-transform 0'

One can use multiple similarity metrics in a single registration stage.The Node below first
performs a linear registation using only the Mutual Information ('Mattes')-metric.
performs a linear registration using only the Mutual Information ('Mattes')-metric.
In a second stage, it performs a non-linear registration ('Syn') using both a
Mutual Information and a local cross-correlation ('CC')-metric. Both metrics are weighted
equally ('metric_weight' is .5 for both). The Mutual Information- metric uses 32 bins.
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2 changes: 1 addition & 1 deletion nipype/interfaces/freesurfer/longitudinal.py
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Expand Up @@ -73,7 +73,7 @@ class RobustTemplateInputSpec(FSTraitedSpecOpenMP):
)
initial_timepoint = traits.Int(
argstr="--inittp %d",
desc="use TP# for spacial init (default random), 0: no init",
desc="use TP# for special init (default random), 0: no init",
)
fixed_timepoint = traits.Bool(
default_value=False,
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2 changes: 1 addition & 1 deletion nipype/interfaces/fsl/model.py
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Expand Up @@ -2026,7 +2026,7 @@ class ClusterInputSpec(FSLCommandInputSpec):
argstr="--stdvol=%s", desc="filename for standard-space volume"
)
num_maxima = traits.Int(argstr="--num=%d", desc="no of local maxima to report")
warpfield_file = File(argstr="--warpvol=%s", desc="file contining warpfield")
warpfield_file = File(argstr="--warpvol=%s", desc="file containing warpfield")


class ClusterOutputSpec(TraitedSpec):
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2 changes: 1 addition & 1 deletion nipype/utils/profiler.py
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Expand Up @@ -44,7 +44,7 @@ def stop(self):

class ResourceMonitor(threading.Thread):
"""
A ``Thread`` to monitor a specific PID with a certain frequence
A ``Thread`` to monitor a specific PID with a certain frequency
to a file
"""

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0