Code for the project "Towards 2030: filling the wildlife ecology gap in the bTB eradication strategy by modelling badger abundance, health, and sett distribution, using recent advances in Bayesian …

PyTorch Wildlife: a Collaborative Deep Learning Framework for Conservation.

Access large language models from the command-line

[ICML2024] Unified Training of Universal Time Series Forecasting Transformers

NoteBook FanControl

Python library to train neural networks with a strong focus on hydrological applications.

This is a project to try and capture as much metadata about ABM models and their experiments. The aim is to generate as much of this metadata as automatically as possible, and also provide the abil…

A wrapper for extracting world football (soccer) data from FBref, Transfermark, Understat

R package for running jSDM models in Stan

Open Source Policy development for the NHS

Quality control for MinION sequencing data

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

R dismo package

The msm R package for continuous-time multi-state modelling of panel data

R package ordinal: Regression Models for Ordinal Data

Statistical Rethinking course and book package

Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)

Implementation of SegNet: A Deep Convolutional Encoder-Decoder Architecture for Semantic Pixel-Wise Labelling

eDNA pipeline

Context aware, pluggable and customizable data protection and de-identification SDK for text and images

TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads

Statistical Rethinking Course Winter 2020/2021

A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework

Create beautiful Gantt charts with ggplot2

Creates a .csv file of all players in the English Player League with their respective team and total fantasy points

Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts

Rstudio addin for version control and assignment management using git