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Large-Scale Comparative Genomics and Structure-Function Analysis Enables Characterization of Known and Novel Genetic Determinants of Antimicrobial Resistance in Bacterial Pathogens
Analysis code accompanying manuscript.
This includes downloading and processing genomic data, running comparative genome analyses, developing and running structure-function models, and statistical analysis / visualization of results.
https://gitlab.com/leoisl/dbgwas
https://github.com/bbuchfink/diamond
https://github.com/ebi-pf-team/interproscan
https://github.com/gcorso/DiffDock/tree/main
https://github.com/gnina/gnina
Please use this DOI number reference, published on Zenodo, when citing the software:
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This material is based upon work supported by the Department of the Air Force under Air Force Contract No. FA8702-15-D-0001 or FA8702-25-D-B002. Any opinions, findings, conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the Department of the Air Force.
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