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37 Open 428 Closed
37 Open 428 Closed
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Issues list

resources/--j
#1065 opened Oct 2, 2024 by hanrong498
scRNA - combine_loom
#1063 opened Sep 26, 2024 by WardDeb
version 3.0.0 fails to create environments (stops at the RNAseq)
#1062 opened Sep 26, 2024 by sunta3iouxos
4
default conda env in 3.0.0
#1061 opened Sep 25, 2024 by sunta3iouxos
4
add --keep-going back to snakemake command
#1058 opened Sep 20, 2024 by katsikora
bowtie --cutntag -X 700, ATAC-seq, maxfragment size
#1057 opened Sep 10, 2024 by sunta3iouxos
shift read correction for ATAC/Cut&Tag
#1056 opened Sep 10, 2024 by sunta3iouxos
feature request? pepatac ATAC-seq question
#1053 opened Sep 10, 2024 by sunta3iouxos
2
snakePipes 3.0.0 logging
#1051 opened Sep 6, 2024 by katsikora
4
conda-env create is using /tmp
#1049 opened Sep 6, 2024 by katsikora
7
Add ChIPQC ChIP-Seq enhancement
#1048 opened Sep 5, 2024 by katsikora
1
error while running the DNA-mapping
#1045 opened Sep 3, 2024 by sunta3iouxos
3
dependency issues wgbs
#1044 opened Sep 3, 2024 by sunta3iouxos
3
pairtools - todos enhancement
#1026 opened Aug 2, 2024 by WardDeb
2 of 5 tasks
@caballero
MACS2_peak_qc
#1025 opened Jul 30, 2024 by LeilyR
2
predictChIPDict for samples without input bug ChIP-Seq
#1024 opened Jul 30, 2024 by LeilyR
1
filter_reads in DNAmapping pipeline doesnt do the filtering bug DNA-mapping
#1023 opened Jul 26, 2024 by LeilyR
3
issue with multiqc conda External Tool An update/modification of an external tool is needed
#1022 opened Jul 25, 2024 by sunta3iouxos
4
error in samtools sort
#1021 opened Jul 22, 2024 by sunta3iouxos
3
error while creating the environment using the git devel
#1020 opened Jul 18, 2024 by sunta3iouxos
1
human reference genome, no_alt and PARY
#1018 opened Jul 15, 2024 by sunta3iouxos
2
snakePipes createEnvs fails
#1016 opened Jun 13, 2024 by musikutiv
1
allow user to specify mincount for filtering windows for DB with CSAW ATAC-seq ChIP-Seq External Tool An update/modification of an external tool is needed
#1014 opened Apr 23, 2024 by katsikora
mRNA-seq: sambamba markdup fails because "too many open files"
#1010 opened Apr 15, 2024 by caballero
Error in mRNA-seq allelic-mapping when using custom genome allelic bug RNA-seq
#1009 opened Apr 15, 2024 by caballero
1
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