8000 Backport PR #29347 on branch v3.10.0-doc (DOC: Explain parameters linthresh and linscale of symlog scale) by meeseeksmachine · Pull Request #29367 · matplotlib/matplotlib · GitHub
[go: up one dir, main page]

Skip to content

Backport PR #29347 on branch v3.10.0-doc (DOC: Explain parameters linthresh and linscale of symlog scale) #29367

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
89 changes: 82 additions & 7 deletions galleries/examples/scales/symlog_demo.py
Original file line number Diff line number Diff line change
@@ -1,7 +1,12 @@
"""
===========
Symlog Demo
===========
============
Symlog scale
============

The symmetric logarithmic scale is an extension of the logarithmic scale that
also covers negative values. As with the logarithmic scale, it is particularly
useful for numerical data that spans a broad range of value 8000 s, especially when there
are significant differences between the magnitudes of the numbers involved.

Example use of symlog (symmetric log) axis scaling.
"""
Expand Down Expand Up @@ -34,12 +39,82 @@
plt.show()

# %%
# It should be noted that the coordinate transform used by ``symlog``
# has a discontinuous gradient at the transition between its linear
# and logarithmic regions. The ``asinh`` axis scale is an alternative
# technique that may avoid visual artifacts caused by these discontinuities.
# Linear threshold
# ----------------
# Since each decade on a logarithmic scale covers the same amount of visual space
# and there are infinitely many decades between a given number and zero, the symlog
# scale must deviate from logarithmic mapping in a small range
# *(-linthresh, linthresh)*, so that the range is mapped to a finite visual space.


def format_axes(ax, title=None):
"""A helper function to better visualize properties of the symlog scale."""
ax.xaxis.get_minor_locator().set_params(subs=[2, 3, 4, 5, 6, 7, 8, 9])
ax.grid()
ax.xaxis.grid(which='minor') # minor grid on too
linthresh = ax.xaxis.get_transform().linthresh
linscale = ax.xaxis.get_transform().linscale
ax.axvspan(-linthresh, linthresh, color='0.9')
if title:
ax.set_title(title.format(linthresh=linthresh, linscale=linscale))


x = np.linspace(-60, 60, 201)
y = np.linspace(0, 100.0, 201)

fig, (ax1, ax2) = plt.subplots(nrows=2, layout="constrained")

ax1.plot(x, y)
ax1.set_xscale('symlog', linthresh=1)
format_axes(ax1, title='Linear region: linthresh={linthresh}')

ax2.plot(x, y)
ax2.set_xscale('symlog', linthresh=5)
format_axes(ax2, title='Linear region: linthresh={linthresh}')

# %%
# Generally, *linthresh* should be chosen so that no or only a few
# data points are in the linear region. As a rule of thumb,
# :math:`linthresh \approx \mathrm{min} |x|`.
#
#
# Linear scale
# ------------
# Additionally, the *linscale* parameter determines how much visual space should be
# used for the linear range. More precisely, it defines the ratio of visual space
# of the region (0, linthresh) relative to one decade.

fig, (ax1, ax2) = plt.subplots(nrows=2, layout="constrained")

ax1.plot(x, y)
ax1.set_xscale('symlog', linthresh=1)
format_axes(ax1, title='Linear region: linthresh={linthresh}, linscale={linscale}')

ax2.plot(x, y)
ax2.set_xscale('symlog', linthresh=1, linscale=0.1)
format_axes(ax2, title='Linear region: linthresh={linthresh}, linscale={linscale}')

# %%
# The suitable value for linscale depends on the dynamic range of data. As most data
# will be outside the linear region, you typically the linear region only to cover
# a small fraction of the visual area.
#
# Limitations and alternatives
# ----------------------------
# The coordinate transform used by ``symlog`` has a discontinuous gradient at the
# transition between its linear and logarithmic regions. Depending on data and
# scaling, this will be more or less obvious in the plot.

fig, ax = plt.subplots()
ax.plot(x, y)
ax.set_xscale('symlog', linscale=0.05)
format_axes(ax, title="Discontinuous gradient at linear/log transition")

# %%
# The ``asinh`` axis scale is an alternative transformation that supports a wide
# dynamic range with a smooth gradient and thus may avoid such visual artifacts.
# See :doc:`/gallery/scales/asinh_demo`.
#
#
# .. admonition:: References
#
Expand Down
Loading
0