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8 Open 31 Closed
8 Open 31 Closed
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Issues list

grabseqs sra -l PRJDB5400 pigz not found, using gzip Traceback (most recent call last): File "/home/tools/anaconda3/bin/grabseqs", line 8, in <module> sys.exit(main()) File "/home/tools/anaconda3/lib/python3.8/site-packages/grabseqslib/__init__.py", line 58, in main metadata_agg = process_sra(args, zip_func) File "/home/tools/anaconda3/lib/python3.8/site-packages/grabseqslib/sra.py", line 27, in process_sra acclist, metadata_agg = get_sra_acc_metadata(sra_identifier, File "/home/tools/anaconda3/lib/python3.8/site-packages/grabseqslib/sra.py", line 97, in get_sra_acc_metadata run_col = lines[0].index("Run") ValueError: 'Run' is not in list
#57 opened Sep 6, 2023 by Damianyangyang
1
Grabseqs error
#56 opened Nov 7, 2022 by xsq2022
9
All grabseqs SRA downloads failing
#55 opened Jun 28, 2022 by cdiener
10
Add support to download data from National Genomics Data Center
#54 opened May 28, 2020 by sejsong
Add support to download data from EBI
#53 opened May 20, 2020 by ElDeveloper
3
grabseqs and geofetch
#45 opened Jan 21, 2020 by nsheff
SRA metadata not including BioSample attributes enhancement New feature or request
#30 opened Jun 21, 2019 by ressy 1.0
4
More intelligently handle HTTP errors in downloading MG-RAST files bug Something isn't working
#7 opened Dec 1, 2018 by louiejtaylor
@louiejtaylor
1
ProTip! Exclude everything labeled bug with -label:bug.