Releases: linkml/linkml-map
Releases · linkml/linkml-map
v0.4.0-rc2
What's Changed
New Features
- Add multi-output stream writers and
-O/--additional-outputCLI option by @amc-corey-cox in #115 - Add
uuid5()function to transformation expressions by @amc-corey-cox in #117 - Allow multiple
class_derivationsfor the same target class by @amc-corey-cox in #118 - Replace hand-rolled expression evaluator with simpleeval by @amc-corey-cox in #122
- Coerce numeric strings in comparison operators by @amc-corey-cox in #135
- Add cross-table lookup support for join-based transformations by @amc-corey-cox in #136
- Implement pivot operation for EAV/measurement data transformation by @cmungall in #108
- Implement offset operation by @madanucd in #110
Bug Fixes
- Fix JSON output: omit null values and add trailing newline by @amc-corey-cox in #149
Security
- Bump asteval>=1.0.5 and duckdb>=1.1.0 to address known security vulnerabilities by @jackhiggs in #119
Documentation
- Clarify architectural vision: TransformationSpecification as IR by @amc-corey-cox in #153
- Document expression language, functions, multi-output, and joins for RC by @amc-corey-cox in #154
Tests
- Add NMDC transformation pattern tests (flattening + uuid5) by @turbomam in #145
- Add NMDC Biosample-Study cross-table join tests by @turbomam in #148
- NMDC: Document inlined-object flattening to lakehouse-style columns (tests only) by @turbomam in #130
- NMDC: Document string/scalar-to-structured measurement transforms (tests only) by @turbomam in #131
Maintenance
- Relax dependency version constraints for library compatibility by @amc-corey-cox in #109
New Contributors
- @jackhiggs made their first contribution in #119
- @madanucd made their first contribution in #110
- @turbomam made their first contribution in #130
Full Changelog: v0.3.9...v0.4.0-rc2
Contributors
cmungall, jackhiggs, and 3 other contributors
Assets 2
v0.3.9
What's Changed
- Add support for copy directives by @Silvanoc in #35
- add biolink subset test separte from other example tests for ease of … by @sierra-moxon in #39
- add denormalizing transform notebook by @sierra-moxon in #40
- Fix up and re-enable tests by @pkalita-lbl in #44
- Handle
overridesonSlotDerivationby @pkalita-lbl in #45 - Clean up dependency specifications by @pkalita-lbl in #46
- Converting all unit tests to pytest by @ialarmedalien in #51
- Ruff format and lint by @ialarmedalien in #52
- Removing poetry and using uv for python and package management by @ialarmedalien in #54
- Ruff linter fixes: automated by @ialarmedalien in #55
- Markdown compiler -- minor template fix by @ialarmedalien in #56
- Automatic python code fixes suggested by ruff by @ialarmedalien in #57
- Automatic ruff lint fixes, plus some type additions and docs. by @ialarmedalien in #58
- add license by @kevinschaper in #66
- Address
Page not founds by @hrshdhgd in #77 - Map value when single value provided for multivalued slot. by @martinwellman in #78
- Implement value_mappings by @amc-corey-cox in #65
- Implement transform on in-lined classes in multi-value slot by @amc-corey-cox in #73
- Slot derivation for constant values by @amc-corey-cox in #80
- Fix Model Issues by @amc-corey-cox in #84
- add template for pydantic gen and value to slotderivation by @sierra-moxon in #87
- Adds new testing Framework with example by @amc-corey-cox in #90
- Update deepdiff to fix CVE by @amc-corey-cox in #92
- And read and write TSV for data mapping by @amc-corey-cox in #100
- Allow populated_from to lookup from external class by @amc-corey-cox in #101
- Adding AI integrations from copier template by @cmungall in #102
New Contributors
- @sierra-moxon made their first contribution in #39
- @pkalita-lbl made their first contribution in #44
- @kevinschaper made their first contribution in #66
- @hrshdhgd made their first contribution in #77
- @amc-corey-cox made their first contribution in #65
Full Changelog: v0.3.8...v0.3.9
Contributors
cmungall, ialarmedalien, and 7 other contributors
Assets 2
v0.3.9-rc2
What's Changed
- Fix Model Issues by @amc-corey-cox in #84
- add template for pydantic gen and value to slotderivation by @sierra-moxon in #87
- Adds new testing Framework with example by @amc-corey-cox in #90
- Update deepdiff to fix CVE by @amc-corey-cox in #92
Full Changelog: v0.3.9-rc1...v0.3.9-rc2
Contributors
sierra-moxon and amc-corey-cox
Assets 2
v0.3.9-rc1
What's Changed
- Add support for copy directives by @Silvanoc in #35
- add biolink subset test separte from other example tests for ease of … by @sierra-moxon in #39
- add denormalizing transform notebook by @sierra-moxon in #40
- Fix up and re-enable tests by @pkalita-lbl in #44
- Handle
overridesonSlotDerivationby @pkalita-lbl in #45 - Clean up dependency specifications by @pkalita-lbl in #46
- Converting all unit tests to pytest by @ialarmedalien in #51
- Ruff format and lint by @ialarmedalien in #52
- Removing poetry and using uv for python and package management by @ialarmedalien in #54
- Ruff linter fixes: automated by @ialarmedalien in #55
- Markdown compiler -- minor template fix by @ialarmedalien in #56
- Automatic python code fixes suggested by ruff by @ialarmedalien in #57
- Automatic ruff lint fixes, plus some type additions and docs. by @ialarmedalien in #58
- add license by @kevinschaper in #66
- Address
Page not founds by @hrshdhgd in #77 - Map value when single value provided for multivalued slot. by @martinwellman in #78
- Implement value_mappings by @amc-corey-cox in #65
- Implement transform on in-lined classes in multi-value slot by @amc-corey-cox in #73
- Slot derivation for constant values by @amc-corey-cox in #80
New Contributors
- @sierra-moxon made their first contribution in #39
- @pkalita-lbl made their first contribution in #44
- @kevinschaper made their first contribution in #66
- @hrshdhgd made their first contribution in #77
- @amc-corey-cox made their first contribution in #65
Full Changelog: v0.3.8...v0.3.9-rc1
Contributors
ialarmedalien, kevinschaper, and 6 other contributors
Assets 2
v0.3.8
Contributors
cmungall and Silvanoc
Assets 2
v0.3.7
Contributors
cmungall
Assets 2
v0.3.6
What's Changed
- Only calculate bindings (ctxt_obj and ctxt_dict) once for expr slots by @martinwellman in #29
- Performance improvement for expr slots using Mapping-derived class for bindings by @martinwellman in #28
New Contributors
- @martinwellman made their first contribution in #29
Full Changelog: v0.3.5...v0.3.6
Contributors
martinwellman
Assets 2
v0.3.5
Full Changelog: v0.3.4...v0.3.5
v0.3.4
Full Changelog: v0.3.3...v0.3.4
v0.3.3
Full Changelog: v0.3.2...v0.3.3