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@labsyspharm

Laboratory of Systems Pharmacology @ Harvard

Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.

Popular repositories

  1. ashlar ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 118 41

  2. mcmicro mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 102 58

  3. scimap scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 71 24

  4. minerva-story minerva-story Public

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    HTML 50 14

  5. minerva_analysis minerva_analysis Public

    JavaScript 24 6

  6. cylinter cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    Python 22 11

Repositories

Showing 10 of 152 repositories
  • ludwigtumoratlas.org Public

    Ludwig Tumor Atlas website

    labsyspharm/ludwigtumoratlas.org’s past year of commit activity
    SCSS 1 1 0 1 Updated Aug 26, 2024
  • plateviewer Public

    Renders HTS microscopy image data into a Minerva Story for visual review

    labsyspharm/plateviewer’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Aug 23, 2024
  • harvardtissueatlas Public

    Harvard Tissue Atlas website

    labsyspharm/harvardtissueatlas’s past year of commit activity
    SCSS 3 6 3 0 Updated Aug 22, 2024
  • cycif.org Public

    cycif.org GitHub Pages Website

    labsyspharm/cycif.org’s past year of commit activity
    JavaScript 2 MIT 9 4 4 Updated Aug 21, 2024
  • okl-analysis Public
    labsyspharm/okl-analysis’s past year of commit activity
    Python 0 0 0 0 Updated Aug 14, 2024
  • minerva-core-ui Public

    A microscopy viewer for non-experts

    labsyspharm/minerva-core-ui’s past year of commit activity
    TypeScript 0 MIT 2 10 2 Updated Aug 13, 2024
  • minerva-author-ui Public

    Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

    labsyspharm/minerva-author-ui’s past year of commit activity
    JavaScript 4 MIT 5 2 4 Updated Aug 13, 2024
  • palom Public

    Piecewise alignment for layers of mosaics

    labsyspharm/palom’s past year of commit activity
    Python 18 MIT 3 4 2 Updated Aug 9, 2024
  • quantification Public

    Quantification module for mcmicro

    labsyspharm/quantification’s past year of commit activity
    Python 9 13 6 1 Updated Aug 9, 2024
  • scimap Public

    Spatial Single-Cell Analysis Toolkit

    labsyspharm/scimap’s past year of commit activity
    Python 71 MIT 24 31 2 Updated Aug 7, 2024
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