-
utils Public
Various software utilities and scripts, mostly written by me
-
-
-
buildLoci Public
Build gene loci out of sets of overlapping transcripts
Perl GNU General Public License v3.0 UpdatedJul 7, 2017 -
anchorTranscriptsEnds Public
Prepare a GTF file of mapped transcriptome reads for anchored transcript merging
-
hashToGff Public
Converts a multidimensional hash, as produced by gffToHash.pm, into an array containing one GFF line per element.
Perl GNU General Public License v3.0 UpdatedMar 21, 2017 -
gffToHash Public
Converts a GFF file to a multi-dimensional perl hash.
Perl GNU General Public License v3.0 UpdatedMar 21, 2017 -
samToPolyA Public
A utility to call polyA sites based on genome alignments in SAM format
-
matchDistribution Public
Given distinct "subject" (S) and a "target" (T) distributions, this script attempts to mimic T's density by pseudo-randomly sampling from S's population.
-
quickTrackHub Public
A script to generate a UCSC Genome Track Hub based on a list of files and a JSON track definition file
{{ message }}