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astral-species-tree
astral-species-tree PublicThis is a Snakemake workflow that calculates maximum-likelihood gene trees with IQ-TREE and 100 bootstrap replicates for each tree. Then, consensus trees are produced and combined to infer a specie…
Python
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supermatrix-tree
supermatrix-tree PublicSnakemake workflow that concatenate MSA files into a supermatrix and calculates a maximum likelihood tree. Imported from my GitLab
Python
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rna-seq-2x-de-novo-assembly
rna-seq-2x-de-novo-assembly PublicSnakemake workflow to de novo assemble transcriptomes with two software, Trinity and Shannon. Imported from my GitLab.
Python
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