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@griffithlab

The Griffith Lab

Academic Lab of Obi and Malachi Griffith

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  1. regtools regtools Public

    Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

    C++ 120 26

  2. GenVisR GenVisR Public

    Genome data visualizations

    R 209 62

  3. pVACtools pVACtools Public

    Python 141 59

  4. VAtools VAtools Public

    A set of tools to annotate VCF files with expression and readcount data

    Python 25 12

  5. rnabio.org rnabio.org Public

    website for the rnaseq course

    SCSS 91 36

  6. civic-v2 civic-v2 Public

    CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

    TypeScript 19 5

Repositories

Showing 10 of 73 repositories
  • neoag_vaccine_scripts Public
    griffithlab/neoag_vaccine_scripts’s past year of commit activity
    Python 0 0 10 1 Updated Nov 4, 2024
  • civic-v2 Public

    CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

    griffithlab/civic-v2’s past year of commit activity
    TypeScript 19 MIT 5 65 5 Updated Nov 4, 2024
  • civicpy Public

    A python interface for the CIViC db application

    griffithlab/civicpy’s past year of commit activity
    Python 8 MIT 5 14 13 Updated Oct 22, 2024
  • htlv_integration_sites Public

    HTLV-1 integration site analysis notes and scripts

    griffithlab/htlv_integration_sites’s past year of commit activity
    R 0 MIT 0 0 0 Updated Oct 21, 2024
  • docm Public archive

    Retired Project: Rails frontend to The Genome Institute's database of curated mutations (DoCM)

    griffithlab/docm’s past year of commit activity
    Ruby 5 MIT 5 6 0 Updated Oct 15, 2024
  • bigmhc Public Forked from KarchinLab/bigmhc

    BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity

    griffithlab/bigmhc’s past year of commit activity
    Jupyter Notebook 0 9 0 0 Updated Oct 3, 2024
  • pVACtools Public
    griffithlab/pVACtools’s past year of commit activity
    Python 141 BSD-3-Clause-Clear 59 81 6 Updated Oct 1, 2024
  • pmbio.org Public

    Website for the precision medicine workshop

    griffithlab/pmbio.org’s past year of commit activity
    SCSS 44 MIT 21 13 1 Updated Sep 30, 2024
  • CIVIC_SVI_Course Public

    A hands on course explaining how to complete somatic cancer variant interpretation using CIViC and current guidelines

    griffithlab/CIVIC_SVI_Course’s past year of commit activity
    CSS 0 CC-BY-4.0 2 0 1 Updated Sep 17, 2024
  • pVACtools_Intro_Course Public

    Getting started with pVACtools - pVACseq, pVACbind and pVACview

    griffithlab/pVACtools_Intro_Course’s past year of commit activity
    CSS 0 CC-BY-4.0 2 0 1 Updated Sep 17, 2024
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