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gawbul/README.md

Hi there, I'm @gawbul (Steve) πŸ‘‹

I am a Computational Scientist. I am interested in Bioinformatics, Evolution, and Genomics. I am the founder of pyOpenSci. I work as a freelance Consultant, and a Site Reliability Engineer - where I focus on solving technical problems relevant to large-scale distributed systems. I have a B.Sc. (Hons) in Biomedical Sciences, a PGcert in Research Training, and a Ph.D. in Computational Genomics from the University of Hull (as part of the EvoHull Group) focusing on questions within Bioinformatics, Comparative Genomics and Molecular Evolution. My current research interests centre around questions relating to Deep Learning with a particular focus on it's applications in Bioinformatics, Genomics and Precision Medicine.

- πŸ”­ I’m currently working on ...

Pathlength a ray tracing program for calculating resolution and sensitivity in crustacean eyes (reniform reflecting superposition compound eyes).

A comparative genomic analyses of introns in several species of fish using publicly available data from the Ensembl genome project.

- 🌱 I’m currently learning ...

Trying to learn too many things Go, all about the Science of Exercise, various topics within SRE from Google including Site Reliability Engineering: Measuring and Managing Reliability and working towards a number of AWS certifications, utilising resources such as the DevOps on AWS Specialization. I am also interested in learning more about technologies such as Kubernetes and Kafka. As part of this I am undertaking the Certified Kubernetes Administrator (CKA) exam via the Linux Foundation, and the Confluent Certified Administrator for Apache Kafka (CCAAK) exam via Confluent.

- πŸ‘― I’m looking to collaborate on ...

Any interesting problems and challenges within a variety of different fields that are amenable to being solved using methods within the broader scope of Computational Science.

- πŸ€” I’m looking for help with ...

Developing my theoretical understanding of Software Engineering and learning more about Data Science, Machine Learning and AI with a particular focus on biological, biomedical and clinical applications. I am also developing my theoretical knowledge of networking and cyber security.

- πŸ’¬ Ask me about ...

Anything relating to Computational Genomics (Bioinformatics, Comparative Genomics and Molecular Evolution), DevOps and Site Reliability Engineering as well as Cloud, High-Performance, and Scientific Computing.

- πŸ“« How to reach me: ...

- πŸ˜„ Pronouns: ...

he/him/his.

- ⚑ Fun fact: ...

I worked as a Security Operative and Bouncer for over 11 years. I am a pugilist, martial artist and yogi.

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  1. pyEnsemblRest pyEnsemblRest Public

    A client for the Ensembl REST API written in the Python programming language

    Python 26 7

  2. goensemblrest goensemblrest Public

    A client for the Ensembl REST API written in the Go programming language

  3. pathlength pathlength Public

    PathLength implements a ray tracing model to calculate resolution and sensitivity in reflective superposition compound eyes.

    Go 3

  4. fastq_rnd_seek fastq_rnd_seek Public

    Randomly sample from a FASTQ file without loading the whole file into memory

    Python 2 3

  5. fish_introns fish_introns Public

    A comparison of intron characteristics across fish species available in Ensembl

    Perl

  6. gawbul.github.io gawbul.github.io Public

    Homepage of Dr Stephen P. Moss, Computational Scientist

    HTML 2