Description
Hi,
I made a quick test on my dev server to update to 20.01 + switch to python3. I removed .venv, and at startup it successfully created the galaxy conda env, and the new .venv virtualenv. But I get this error when starting the report webapp:
galaxy.webapps.util DEBUG 2020-02-28 17:32:40,532 [p:6566,w:0,m:0] [MainThread] Enabling 'paste.httpexceptions' middleware
galaxy.webapps.util DEBUG 2020-02-28 17:32:40,534 [p:6566,w:0,m:0] [MainThread] Enabling 'RecursiveMiddleware' middleware
galaxy.webapps.util DEBUG 2020-02-28 17:32:40,549 [p:6566,w:0,m:0] [MainThread] Enabling 'ErrorMiddleware' middleware
galaxy.webapps.util DEBUG 2020-02-28 17:32:40,551 [p:6566,w:0,m:0] [MainThread] Enabling 'TransLogger' middleware
galaxy.webapps.util DEBUG 2020-02-28 17:32:40,554 [p:6566,w:0,m:0] [MainThread] Enabling 'XForwardedHostMiddleware' middleware
galaxy.webapps.util WARNING 2020-02-28 17:32:40,554 [p:6566,w:0,m:0] [MainThread] 'wrap_in_static' is enabled in your configuration but the uWSGI application stack does not support it, this middleware has been disabled
WSGI app 0 (mountpoint='') ready in 5 seconds on interpreter 0x55c8f8e960d0 pid: 6566 (default app)
mounting galaxy.webapps.reports.buildapp:uwsgi_app() on /reports
added lib/ to pythonpath.
Traceback (most recent call last):
File "lib/galaxy/webapps/reports/buildapp.py", line 12, in <module>
import galaxy.model.mapping
File "lib/galaxy/model/mapping.py", line 41, in <module>
from galaxy.model.custom_types import JSONType, MetadataType, TrimmedString, UUIDType
File "lib/galaxy/model/custom_types.py", line 10, in <module>
import numpy
File "/opt/galaxy_dev/galaxy-dist/.venv/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
from . import core
File "/opt/galaxy_dev/galaxy-dist/.venv/lib/python3.6/site-packages/numpy/core/__init__.py", line 40, in <module>
from . import multiarray
File "/opt/galaxy_dev/galaxy-dist/.venv/lib/python3.6/site-packages/numpy/core/multiarray.py", line 13, in <module>
from . import overrides
File "/opt/galaxy_dev/galaxy-dist/.venv/lib/python3.6/site-packages/numpy/core/overrides.py", line 46, in <module>
""")
RuntimeError: implement_array_function method already has a docstring
unable to load app 1 (mountpoint='/reports') (callable not found or import error)
*** daemonizing uWSGI ***
No error when starting galaxy though