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1. ukhsa-collaboration/LOMA ukhsa-collaboration/LOMA Public

   A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.

   Nextflow 6

2. PZQ_POPGEN PZQ_POPGEN Public

   Code repository for the publication: "Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration"

   2 1

3. SM_VARIATION SM_VARIATION Public

   Code repository for the manuscript: Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni

4. schisto_livestock_hybrids schisto_livestock_hybrids Public

   Code repository for the publication: "Genomic evidence of contemporary hybridization between Schistosoma species"

   Python 1

5. PGL_cgMLST PGL_cgMLST Public

   Code repository for an upcoming publication focused on pneumococcal genome characterization.

   Python 1

6. useful_scripts useful_scripts Public

   Accessory scripts for file manipulation and other analyses

   Python