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The deepTools ecosystem

deepTools and related packages

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  1. pyGenomeTracks pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    Python 793 116

  2. 10000
    deepTools deepTools Public

    Tools to process and analyze deep sequencing data.

    Python 697 215

  3. HiCExplorer HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    Python 239 70

  4. pyBigWig pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    C 226 51

  5. HiCBrowser HiCBrowser Public

    Simple web browser to visualize HiC tracks

    JavaScript 18 5

  6. py2bit py2bit Public

    A python library for accessing 2bit files

    C 17 9

Repositories

Showing 10 of 13 repositories
  • deepTools Public

    Tools to process and analyze deep sequencing data.

    deeptools/deepTools’s past year of commit activity
    Python 697 215 138 12 Updated Feb 17, 2025
  • py2bit Public

    A python library for accessing 2bit files

    deeptools/py2bit’s past year of commit activity
    C 17 MIT 9 0 0 Updated Jan 21, 2025
  • pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    deeptools/pyBigWig’s past year of commit activity
    C 226 MIT 51 11 0 Updated Jan 17, 2025
  • HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    deeptools/HiCExplorer’s past year of commit activity
    Python 239 GPL-3.0 70 135 (1 issue needs help) 0 Updated Dec 2, 2024
  • pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    deeptools/pyGenomeTracks’s past year of commit activity
    Python 793 GPL-3.0 116 27 7 Updated Jul 10, 2024
  • HiCMatrix Public
    deeptools/HiCMatrix’s past year of commit activity
    Python 12 GPL-3.0 8 0 0 Updated Apr 30, 2024
  • github-actions Public

    Play around with github actions

    deeptools/github-actions’s past year of commit activity
    JavaScript 0 MIT 1 0 12 Updated Aug 16, 2023
  • Knight-Ruiz-Matrix-balancing-algorithm Public
    deeptools/Knight-Ruiz-Matrix-balancing-algorithm’s past year of commit activity
    C++ 10 5 5 1 Updated Apr 13, 2021
  • HiCBrowser Public

    Simple web browser to visualize HiC tracks

    deeptools/HiCBrowser’s past year of commit activity
    JavaScript 18 GPL-2.0 5 6 2 Updated Dec 12, 2019
  • hicBuildMatrixCpp Public

    C++ implementation of hicBuildMatrix

    deeptools/hicBuildMatrixCpp’s past year of commit activity
    C++ 2 MIT 2 0 0 Updated Oct 16, 2019
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