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@debbiemarkslab

Debora Marks Lab

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  1. EVcouplings EVcouplings Public

    Evolutionary couplings from protein and RNA sequence alignments

    Jupyter Notebook 291 80

  2. EVzoom EVzoom Public

    Visually explore covariation in protein families

    JavaScript 40 6

  3. plmc plmc Public

    Inference of couplings in proteins and RNAs from sequence variation

    C 113 37

  4. EVmutation EVmutation Public

    Mutation effects predicted from sequence co-variation

    HTML 70 14

  5. EVE EVE Public

    Forked from OATML/EVE

    Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning"

    Python 9 10000 1

  6. EVEscape EVEscape Public

    Forked from OATML-Markslab/EVEscape

    Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"

    Python 1

Repositories

Showing 10 of 31 repositories
  • priority-viruses Public

    Official repository for the paper "Variant effect prediction with reliability estimation across priority viruses"

    debbiemarkslab/priority-viruses’s past year of commit activity
    17 0 0 0 Updated Oct 23, 2025
  • EVcouplings Public

    Evolutionary couplings from protein and RNA sequence alignments

    debbiemarkslab/EVcouplings’s past year of commit activity
    Jupyter Notebook 291 80 55 (2 issues need help) 6 Updated Oct 23, 2025
  • LOL-EVE Public

    Placehoolder for LOL-EVE model and publication analysis scripts

    debbiemarkslab/LOL-EVE’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Sep 26, 2025
  • popEVE Public
    debbiemarkslab/popEVE’s past year of commit activity
    Python 17 GPL-3.0 3 0 0 Updated Sep 4, 2025
  • ML-antibody-discovery Public
    debbiemarkslab/ML-antibody-discovery’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Jun 22, 2025
  • PROSE Public
    debbiemarkslab/PROSE’s past year of commit activity
    Python 2 MIT 0 0 0 Updated May 29, 2025
  • ML_affinity_maturation Public

    Repository containing the code performing ML assisted affinity maturation

    debbiemarkslab/ML_affinity_maturation’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 7, 2025
  • sequenceMDS Public
    debbiemarkslab/sequenceMDS’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 22, 2024
  • EVEscape Public Forked from OATML-Markslab/EVEscape

    Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"

    debbiemarkslab/EVEscape’s past year of commit activity
    Python 1 MIT 12 0 1 Updated Mar 5, 2024
  • Vax_design Public
    debbiemarkslab/Vax_design’s past year of commit activity
    Jupyter Notebook 5 MIT 1 0 0 Updated Mar 5, 2024
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