chemosim-lab ProLIF · Discussions · GitHub

8000 chemosim-lab ProLIF · Discussions · GitHub

Discussions

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cation bridging interactions

sarahvs99 asked Dec 1, 2025 in Q&A · Closed · Answered

1
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WaterBridge not avaiable

Gixxdd asked Oct 13, 2025 in Q&A · Closed · Answered

2
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Pi-pi interactions

mariagiovannaeva asked Oct 7, 2025 in Q&A · Unanswered

0
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multi model analysis

bilbibalou asked Aug 19, 2025 in Q&A · Closed · Unanswered

8
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run_from_iterate function always stuck

Lili-Cao asked Jul 30, 2025 in Q&A · Closed · Unanswered

0
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Support for hybrid molecules (including dummy atoms)

noahharrison64 started Jul 1, 2025 in General

1
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Interacting atom names from prolif.ifp?

Erikna00 asked Jul 3, 2025 in Q&A · Unanswered

1
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Does the trajectory file need to be protein centered?

lanselibai started Jun 13, 2025 in General

2
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Opposite partial charge interaction

lanselibai started Jun 2, 2025 in General

2
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Create barcode for protein-protein residue-residue interaction from single-frame PDB

biomolsim asked Apr 8, 2025 in Q&A · Answered

10BC0

11
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Justification for the default value of the intersect_radius EdgeToFace value?

rjdirisio asked Feb 18, 2025 in Q&A · Unanswered

0
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The interactions in a 2D interactive diagram is not displayed

sribone asked Nov 21, 2024 in Q&A · Closed · Unanswered

1
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Proteins with metal ions in the binding site

agerexx asked Jul 3, 2024 in Q&A · Answered

2
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can not use from_pkl function

Lili-Cao asked Apr 9, 2024 in Q&A · Unanswered

3
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how can I display the barcode fig in a subplot?

Lili-Cao asked Apr 11, 2024 in Q&A · Unanswered

2
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Please help me to resolve this error in prolif.

Shivani8878 asked Apr 8, 2024 in Q&A · Unanswered

13
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threshold for fp.plot_barcode().

tjrong123 asked Nov 28, 2023 in Q&A · Answered

6
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Can I get the fp from a concatenated dataframe ?

Lili-Cao asked Apr 2, 2024 in Q&A · Unanswered

2
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load and display protein structure

Lili-Cao asked Mar 25, 2024 in Q&A · Unanswered

2
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Default distance cut-off values for interactions: Can increase for long range?

SampurnaM asked Mar 4, 2024 in Q&A · Closed · Unanswered

1
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Hide an interaction/specific residue inclusively?

ONISniperOne asked Dec 11, 2023 in Q&A · Answered

7
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Visualization of hydrophobic interactions in 2D/3D

ONISniperOne started Dec 11, 2023 in Ideas · Closed

2
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What is the purpose of using guess bond or guess atom before calculating the fingerprint?

tjrong123 asked Nov 28, 2023 in Q&A · Answered

4
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could not save html from plot_lignetwork version 2

tjrong123 asked Nov 27, 2023 in Q&A · Answered

2
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Is it possible to track atoms and their interaction in docking poses after return_atom is removed.

syedzayyan started Nov 6, 2023 in General · Closed

3

0