panelcn.MOPS - CNV detection tool for targeted NGS panel data

The panelcn.mops R package is based on the cn.mops package and allows to detect copy number variations (CNVs) from targeted NGS panel data. Please visit http://www.bioinf.jku.at/software/panelcnmops/index.html for additional information.

Installation:

1. install cn.mops from bioconductor.org:

   ## try http:// if https:// URLs are not supported  
   if (!requireNamespace("BiocManager", quietly=TRUE))
       install.packages("BiocManager")
   BiocManager::install("cn.mops")  
   

2. install panelcn.mops from github e.g. like this:

   install.packages("devtools")  
   devtools::install_github("bioinf-jku/panelcn.mops")