Releases: bioSyntax/bioSyntax
Releases · bioSyntax/bioSyntax
biosyntax-v1.0.0
Release Notes
🐣 bioSyntax v1.0.0b 🐣
- Syntax highlighting for FASTA, FASTQ, CWL, BED, GTF, PDB, PML, SAM, VCF file formats
- Available for:
less,vim,gedit,sublimeandVScode - Updated installer script + packaged documentation
Thanks To
Hotfix
- Included
sublimeandvimfolder in release zip.
biosyntax-v0.1-beta4
Release Notes
- New Syntax
vim-nexus - New Syntax
vim-pml&sublime-pml(Pymol Script Language) - New Syntax
cwl-sublimeandcwl-vim(Common Workflow Language) - Add
bam-lessalias forsam-lessby default - Removed
sudorequirements for linux-gedit & linux-less installations
New Alternative Syntaxes
- vim_fasta-ORF: Syntax for finding and highlighting Open Reading Frames
Thanks to
- Luis Carvalho for
vim-nexus - @manabuishii for
cwl-sublimeandcwl-vim - @speleo3 for
vim-pml& @bbarad forsublime-pml
biosyntax-v0.1-beta3
Release Notes
- Updated installer script with prompts
- Sublime bioSyntax file formats will not automatically use the bioMonokai theme; users can set the theme for all other files to whichever they like.
- Re-organized repo to have vim/ and sublime/ as submodules for installation via Pa 8000 thogen and PackageControl respectively
- Few minor bug fixes across syntaxes.
- Sublime/vim/gedit gtf and bed files are piloting 2-shade chromosome coordinates
biosyntax-v0.1-beta2
Release Notes
- Added .flagstat support (from:
samtools flagstat) for all ports - Fixed a bug with sam-less, sam-vim, sam-gedit syntax files not working with some sam files.
- Fixed a few minor bugs in the installer and added less install prompts
- Fixed a few minor bugs in CLUSTAL format and added .aln extension recognition.
Thanks to:
- @GuangchuangYu for installer bugfix.
- @xis19 for gaussian-vim syntax file (quantam chemistry).
- @vievieyu for bug-fix in CLUSTAL and adding .aln support
biosyntax-v0.1-beta1
Release Notes
- Pre-print manuscript version
- Updated installer (v0.1) script to be more descriptive, require less sudo commands
biosyntax-v0.1-beta
Release Notes
🐣 Initial bioSyntax release 🐣
- Syntax highlighting for FASTA (nt + aa), FASTQ, BED, GTF, PDB, SAM, and VCF file formats
- Ported for gedit, sublime-text-3, vim, and less
- Previous development was done on www.github.com/ababaian/bioSyntax
- Installer updated