Vector graphics cartoons from protein structure

Build smaller, faster, and more secure desktop and mobile applications with a web frontend.

🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

A pipeline for bioinformatics analysis of bacterial genomes

💾 📃 "Reads to report" for public health and clinical microbiology

Package for fetching metadata and downloading data from SRA/ENA/GEO

Adds playful pets 🦀🐱🐶 in your VS Code window

Bayesian analysis + tidy data + geoms (R package)

Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.

The Journal of Open Source Software

the pangenome graph builder

Main development repository for SpreadGL

Open source code for AlphaFold.

Simple terminal alignment viewer

Alignment viewer for linux terminal

Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).

An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2

Sequence Indexing engine for Large Order of genomic data

An open-source software package to power microbial genomic databases

An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.

Reference-based consensus creation

This repository contains math tutorials I created for Bioinformatics and Computational Biology.

SplitsTree App

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

Assembly and intrahost/low-frequency variant calling for viral samples

Java based tools for bulk downloading read/analysis files from ENA via FTP or Aspera.

A collection of scripts to assist in the retrieval of data from the ENA Browser

A Python library for interacting with ENA's API

A FUSE filesystem for your Google calendar

Fast and accurately polish the genome generated by long reads.