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1. STAR STAR Public

   Forked from alexdobin/STAR

   RNA-seq aligner

   C 1

2. antigen.garnish antigen.garnish Public

   Forked from andrewrech/antigen.garnish

   Ensemble Antigen Prediction and Quality Analysis from DNA Variants and Proteins in R

   R

3. gatk gatk Public

   Forked from broadinstitute/gatk

   Official code repository for GATK versions 4 and up

   Java

4. kallisto kallisto Public

   Forked from pachterlab/kallisto

   Near-optimal RNA-Seq quantification

   C

5. strelka strelka Public

   Forked from Illumina/strelka

   Strelka2 germline and somatic small variant caller

   C++

6. griffithlab/pVACtools griffithlab/pVACtools Public

   Python 141 59