Updated Validation Pipeline, CLI interface added, Containerized SPARCED, etc. #20
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…unc. Rebuilding Docker container.
Fallacies in cell_death_metrics script
Adding Querying support into the updated species nomenclature. Provided with a string or list, along with the config.yaml, can index the species sheet for all species containing the str/list and builds a formula summating all species. Primarily for use in the benchmarking directory.
…almetto to test the new specs
should be pandas.Series upon pass.
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Conformed new validation pipeline to current SPARCED file format. Tested both singularity container on a HPC and a Docker container locally for operation.
There is one major change that has been made to the files in src/ and the main.py file : the main file has been moved up one directory closer to the project root (i.e. SPARCED/SPARCED/main.py) and the files in src/ have been changed accordingly such that executing the main.py file from SPARCED/SPARCED operates efficiently.