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@MDAnalysis

MDAnalysis

working with data in the computational molecular sciences

MDAnalysis

The MDAnalysis Community is interested in all facets of working with data in the computational molecular sciences. We welcome everyone. We all follow our Code of Conduct.

We maintain a number of projects related to the broader goal of processing and analyzing data in the computational molecular sciences. In particular, mdanalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale, spanning use cases from interactions of drugs with proteins to novel materials. It is widely used in the scientific community and is written by scientists for scientists.

You can learn more about MDAnalysis on our home page https://www.mdanalysis.org/ and read regular updates in our blog. You can also follow us on LinkedIn: MDAnalysis and BlueSky @mdanalysis.bsky.social.

MDAnalysis is a fiscally sponsored project of NumFOCUS, a nonprofit dedicated to supporting the open source scientific computing community.

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  1. mdanalysis mdanalysis Public

    MDAnalysis is a Python library to analyze molecular dynamics simulations.

    Python 1.5k 750

  2. mdacli mdacli Public

    Command line interface for MDAnalysis

    Python 23 8

  3. MDAnalysisData MDAnalysisData Public

    10BC0 Access to data for workshops and extended tests of MDAnalysis.

    Python 19 4

  4. GridDataFormats GridDataFormats Public

    GridDataFormats is a pure Python library to handle data on a regular grid using commonly used file formats in molecular simulations.

    Python 31 20

  5. UserGuide UserGuide Public

    User Guide for MDAnalysis

    Python 29 43

  6. distopia distopia Public

    SIMD instructions for faster distance calculations.

    C++ 24 6

Repositories

Showing 10 of 76 repositories
  • MDAKits Public

    The MDAnalysis Toolkits Registry

    MDAnalysis/MDAKits’s past year of commit activity
    Python 19 32 42 5 Updated Dec 17, 2025
  • benchmarks Public

    Performance benchmarks of MDAnalysis provided by ASV.

    MDAnalysis/benchmarks’s past year of commit activity
    Shell 2 BSD-3-Clause 1 0 0 Updated Dec 16, 2025
  • parallelization-benchmarks Public

    Repository for coordination of parallelization paper writing

    MDAnalysis/parallelization-benchmarks’s past year of commit activity
    TeX 0 LGPL-2.1 0 1 3 Updated Dec 15, 2025
  • mdanalysis Public

    MDAnalysis is a Python library to analyze molecular dynamics simulations.

    MDAnalysis/mdanalysis’s past year of commit activity
    Python 1,504 750 426 (34 issues need help) 71 Updated Dec 15, 2025
  • MDAnalysis.github.io Public

    MDAnalysis home page mdanalysis.org as GitHub pages.

    MDAnalysis/MDAnalysis.github.io’s past year of commit activity
    CSS 15 47 22 (2 issues need help) 1 Updated Dec 12, 2025
  • UserGuide Public

    User Guide for MDAnalysis

    MDAnalysis/UserGuide’s past year of commit activity
    Python 29 LGPL-2.1 43 58 2 Updated Dec 12, 2025
  • mdanalysis-subprojects-branding Public

    Logos and branding for MDAnalysis subprojects

    MDAnalysis/mdanalysis-subprojects-branding’s past year of commit activity
    Python 0 0 0 1 Updated Dec 11, 2025
  • GridDataFormats Public

    GridDataFormats is a pure Python library to handle data on a regular grid using commonly used file formats in molecular simulations.

    MDAnalysis/GridDataFormats’s past year of commit activity
    Python 31 LGPL-3.0 20 5 2 Updated Dec 11, 2025
  • mdacli Public

    Command line interface for MDAnalysis

    MDAnalysis/mdacli’s past year of commit activity
    Python 23 GPL-3.0 8 9 (4 issues need help) 0 Updated Dec 2, 2025
  • solvation-analysis Public

    A comprehensive tool for analyzing liquid solvation structure.

    MDAnalysis/solvation-analysis’s past year of commit activity
    Python 54 GPL-3.0 14 10 0 Updated Nov 26, 2025
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