ALRA paper Codes

Main figures

• Figure 1: schematic.tex
• Figure 2A-C: alra_PBMC.R
• Figure 2D: alra_ImmGen_comparison_multiple.R
• Figure 3A: alra_downsample2.R
• Figure 3B: alra_Hrvatin_tsne.R
• Figure 3C: alra_Tasic.R
• Figure 4: performance.R
• Figure 5A: alra_PBMC.R
• Figure 5B: alra_Hrvatin_tsne.R

Supplementary tables

• Table S1: alra_derm.R
• Table S2: alra_CiteSeq_PBMC.R
• Table S3: alra_CiteSeq_CBMC.R
• Table S4: alra_CiteSeq_PBMC.R
• Table S5-S7: alra_PBMC.R
• Table S8: alra_ImmGen_comparison_sf.R
• Table S9: Lukassen.R

Supplementary figures

• Figure S1: alra_PBMC.R
• Figure S2,S3: alra_derm.R
• Figure S4: pbmc_gating.R
• Figure S5: Lukassen.R
• Figure S6-S8: alra_downsample2.R
• Figure S9: alra_CiteSeq_CBMC.R
• Figure S10: alra_ImmGen_comparison.R
• Figure S11: ImmGen_Multinomial_Simulation.R
• Figure S12: alra_FISH_sub.R
• Figure S13,S14: alra_Hrvatin_tsne.R
• Figure S15: alra_downsample2.R
• Figure S16-S18: manolis_data/
• Figure S19: alra_PBMC.R
• Figure S20,S21: Hrvatin_Experimental.R